Strain Fitness in Pseudomonas putida KT2440 around PP_1027

Experiment: Adaptation in M9 media timecourse 1; day 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Adaptation in M9 media timecourse 1; day 2
1,170,771	+				-1.6
1,170,772	-				-0.3
1,170,772	-				-0.5
1,170,772	-				-0.7
1,170,772	-				+2.5
1,170,799	+				+0.8
1,171,025	-		PP_1026	0.22	-0.2
1,171,072	-		PP_1026	0.28	-0.4
1,171,371	+		PP_1026	0.64	-0.1
1,171,385	+		PP_1026	0.66	-0.4
1,171,599	+				-1.0
1,171,599	+				+0.2
1,171,600	-				-1.6
1,171,682	+				+0.4
1,171,683	-				+0.3
1,172,507	+		PP_1027	0.60	-0.3
1,172,515	+		PP_1027	0.61	-0.5
1,172,516	-		PP_1027	0.61	+1.5
1,172,519	+		PP_1027	0.61	+0.5
1,172,520	-		PP_1027	0.61	-0.0
1,172,743	+		PP_1027	0.78	-0.5
1,172,744	-		PP_1027	0.78	+0.1
1,172,744	-		PP_1027	0.78	+0.7
1,172,744	-		PP_1027	0.78	+1.3
1,172,744	-		PP_1027	0.78	+0.8
1,172,744	-		PP_1027	0.78	-0.2
1,172,751	+		PP_1027	0.78	+0.3
1,172,752	-		PP_1027	0.78	+0.7
1,172,892	+		PP_1027	0.88	-0.7
1,172,892	+		PP_1027	0.88	+0.3
1,172,893	-		PP_1027	0.88	+0.3
1,172,893	-		PP_1027	0.88	+1.7
1,172,893	-		PP_1027	0.88	-0.2
1,173,005	-				-0.3
1,173,064	+				+0.4
1,173,064	+				-1.7
1,173,064	+				+0.3
1,173,065	-				+0.1
1,173,065	-				+0.6
1,173,099	+				+0.0
1,173,315	+		PP_1028	0.19	-0.3
1,173,316	-		PP_1028	0.19	-0.5
1,173,403	+		PP_1028	0.29	-0.2
1,173,403	+		PP_1028	0.29	+0.1
1,173,404	-		PP_1028	0.29	-0.4
1,173,682	+		PP_1028	0.61	-0.0
1,173,946	+				-0.3
1,173,946	+				-0.5
1,173,947	-				+0.1