Strain Fitness in Escherichia coli BW25113 around b0811

Experiment: LB Aerobic with 2-Mercaptopyridine N-oxide 0.0000078125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglnQ and glnP overlap by 4 nucleotidesglnP and glnH are separated by 138 nucleotidesglnH and dps are separated by 403 nucleotides b0809: glnQ - glutamine ABC transporter ATP-binding protein (NCBI), at 844,964 to 845,686 glnQ b0810: glnP - glutamine ABC transporter permease protein (NCBI), at 845,683 to 846,342 glnP b0811: glnH - glutamine ABC transporter periplasmic protein (NCBI), at 846,481 to 847,227 glnH b0812: dps - DNA protection during starvation conditions (NCBI), at 847,631 to 848,134 dps Position (kb) 846 847 848Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 845.547 kb on - strand, within glnQat 845.569 kb on + strand, within glnQat 845.596 kb on - strand, within glnQat 845.596 kb on - strand, within glnQat 845.994 kb on + strand, within glnPat 845.994 kb on + strand, within glnPat 845.997 kb on - strand, within glnPat 845.998 kb on + strand, within glnPat 845.998 kb on + strand, within glnPat 846.069 kb on + strand, within glnPat 846.069 kb on + strand, within glnPat 846.069 kb on + strand, within glnPat 846.085 kb on + strand, within glnPat 846.154 kb on - strand, within glnPat 846.209 kb on - strand, within glnPat 846.326 kb on + strandat 846.326 kb on + strandat 846.420 kb on + strandat 846.420 kb on + strandat 846.434 kb on + strandat 846.434 kb on + strandat 846.502 kb on - strandat 846.583 kb on + strand, within glnHat 846.583 kb on + strand, within glnHat 846.604 kb on + strand, within glnHat 846.658 kb on - strand, within glnHat 846.694 kb on + strand, within glnHat 846.727 kb on - strand, within glnHat 846.729 kb on + strand, within glnHat 846.731 kb on + strand, within glnHat 846.734 kb on - strand, within glnHat 846.745 kb on - strand, within glnHat 846.745 kb on - strand, within glnHat 846.812 kb on - strand, within glnHat 846.817 kb on + strand, within glnHat 846.817 kb on + strand, within glnHat 847.125 kb on + strand, within glnHat 847.125 kb on + strand, within glnHat 847.218 kb on - strandat 847.218 kb on - strandat 847.222 kb on + strandat 847.413 kb on + strandat 847.599 kb on + strandat 847.608 kb on + strandat 847.608 kb on + strandat 847.766 kb on - strand, within dpsat 847.861 kb on + strand, within dpsat 847.887 kb on - strand, within dpsat 847.918 kb on - strand, within dpsat 847.970 kb on + strand, within dpsat 848.006 kb on - strand, within dpsat 848.009 kb on - strand, within dpsat 848.009 kb on - strand, within dpsat 848.033 kb on + strand, within dpsat 848.041 kb on + strand, within dpsat 848.041 kb on + strand, within dpsat 848.066 kb on + strand, within dpsat 848.072 kb on - strand, within dpsat 848.074 kb on - strand, within dpsat 848.076 kb on + strand, within dpsat 848.182 kb on + strandat 848.192 kb on + strandat 848.207 kb on - strandat 848.207 kb on - strandat 848.208 kb on + strandat 848.208 kb on + strandat 848.208 kb on + strandat 848.208 kb on + strandat 848.216 kb on - strandat 848.216 kb on - strandat 848.216 kb on - strandat 848.216 kb on - strandat 848.221 kb on + strandat 848.227 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with 2-Mercaptopyridine N-oxide 0.0000078125 mM
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845,547 - glnQ b0809 0.81 -0.3
845,569 + glnQ b0809 0.84 +0.9
845,596 - glnQ b0809 0.87 -0.1
845,596 - glnQ b0809 0.87 +0.7
845,994 + glnP b0810 0.47 +0.7
845,994 + glnP b0810 0.47 +0.5
845,997 - glnP b0810 0.48 -0.1
845,998 + glnP b0810 0.48 -1.1
845,998 + glnP b0810 0.48 +0.0
846,069 + glnP b0810 0.58 -0.3
846,069 + glnP b0810 0.58 -0.1
846,069 + glnP b0810 0.58 +0.0
846,085 + glnP b0810 0.61 -0.5
846,154 - glnP b0810 0.71 -0.7
846,209 - glnP b0810 0.80 +1.0
846,326 + -1.1
846,326 + +0.3
846,420 + -0.1
846,420 + -0.8
846,434 + +0.9
846,434 + +1.5
846,502 - -0.1
846,583 + glnH b0811 0.14 +1.7
846,583 + glnH b0811 0.14 -1.4
846,604 + glnH b0811 0.16 -0.4
846,658 - glnH b0811 0.24 +0.1
846,694 + glnH b0811 0.29 +1.9
846,727 - glnH b0811 0.33 -0.9
846,729 + glnH b0811 0.33 +0.3
846,731 + glnH b0811 0.33 +1.1
846,734 - glnH b0811 0.34 +0.3
846,745 - glnH b0811 0.35 -1.7
846,745 - glnH b0811 0.35 -0.1
846,812 - glnH b0811 0.44 +0.9
846,817 + glnH b0811 0.45 -0.6
846,817 + glnH b0811 0.45 -0.4
847,125 + glnH b0811 0.86 +6.2
847,125 + glnH b0811 0.86 +0.2
847,218 - -0.1
847,218 - -1.4
847,222 + +0.9
847,413 + +0.8
847,599 + -0.2
847,608 + -0.6
847,608 + -0.1
847,766 - dps b0812 0.27 -0.0
847,861 + dps b0812 0.46 +0.1
847,887 - dps b0812 0.51 +0.1
847,918 - dps b0812 0.57 +0.7
847,970 + dps b0812 0.67 +0.4
848,006 - dps b0812 0.74 -0.3
848,009 - dps b0812 0.75 +0.0
848,009 - dps b0812 0.75 +0.9
848,033 + dps b0812 0.80 -1.8
848,041 + dps b0812 0.81 +2.5
848,041 + dps b0812 0.81 -1.9
848,066 + dps b0812 0.86 +0.2
848,072 - dps b0812 0.88 +0.8
848,074 - dps b0812 0.88 -0.3
848,076 + dps b0812 0.88 -0.0
848,182 + -0.1
848,192 + -0.1
848,207 - +0.0
848,207 - -0.1
848,208 + +0.2
848,208 + +0.9
848,208 + +0.9
848,208 + +0.6
848,216 - -0.1
848,216 - -0.7
848,216 - +0.2
848,216 - -1.3
848,221 + +1.1
848,227 + -0.6

Or see this region's nucleotide sequence