Strain Fitness in Escherichia coli BW25113 around b2323

Experiment: LB Aerobic with Irgasan 0.0000003125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfcJ and fabB are separated by 264 nucleotidesfabB and b2324 are separated by 158 nucleotides b2322: yfcJ - predicted transporter (NCBI), at 2,436,964 to 2,438,142 yfcJ b2323: fabB - 3-oxoacyl-(acyl carrier protein) synthase (NCBI), at 2,438,407 to 2,439,627 fabB b2324: b2324 - putative peptidase (VIMSS), at 2,439,786 to 2,441,792 b2324 Position (kb) 2438 2439 2440Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 2437.446 kb on - strand, within yfcJat 2437.471 kb on + strand, within yfcJat 2437.534 kb on + strand, within yfcJat 2437.574 kb on + strand, within yfcJat 2437.687 kb on - strand, within yfcJat 2437.818 kb on + strand, within yfcJat 2437.818 kb on + strand, within yfcJat 2437.818 kb on + strand, within yfcJat 2437.917 kb on - strand, within yfcJat 2437.996 kb on + strand, within yfcJat 2437.997 kb on + strand, within yfcJat 2437.997 kb on + strand, within yfcJat 2437.997 kb on - strand, within yfcJat 2438.055 kb on - strandat 2438.138 kb on + strandat 2438.146 kb on - strandat 2438.175 kb on - strandat 2438.181 kb on - strandat 2438.181 kb on - strandat 2439.701 kb on - strandat 2439.733 kb on + strandat 2439.733 kb on + strandat 2439.741 kb on - strandat 2439.765 kb on + strandat 2439.765 kb on + strandat 2439.799 kb on + strandat 2439.933 kb on - strandat 2439.991 kb on - strand, within b2324at 2440.001 kb on - strand, within b2324at 2440.001 kb on - strand, within b2324at 2440.172 kb on + strand, within b2324at 2440.172 kb on + strand, within b2324at 2440.185 kb on - strand, within b2324at 2440.251 kb on - strand, within b2324at 2440.535 kb on + strand, within b2324at 2440.535 kb on + strand, within b2324at 2440.551 kb on + strand, within b2324

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Aerobic with Irgasan 0.0000003125 mM
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2,437,446 - yfcJ b2322 0.41 -2.7
2,437,471 + yfcJ b2322 0.43 +1.5
2,437,534 + yfcJ b2322 0.48 +0.2
2,437,574 + yfcJ b2322 0.52 -0.1
2,437,687 - yfcJ b2322 0.61 +0.6
2,437,818 + yfcJ b2322 0.72 -0.1
2,437,818 + yfcJ b2322 0.72 +1.9
2,437,818 + yfcJ b2322 0.72 +1.1
2,437,917 - yfcJ b2322 0.81 -1.1
2,437,996 + yfcJ b2322 0.88 +2.0
2,437,997 + yfcJ b2322 0.88 +1.9
2,437,997 + yfcJ b2322 0.88 +3.0
2,437,997 - yfcJ b2322 0.88 -0.1
2,438,055 - -0.1
2,438,138 + +2.0
2,438,146 - +1.4
2,438,175 - +0.3
2,438,181 - +0.3
2,438,181 - -1.2
2,439,701 - +6.6
2,439,733 + +1.3
2,439,733 + +0.4
2,439,741 - +2.3
2,439,765 + -1.4
2,439,765 + +1.1
2,439,799 + +1.0
2,439,933 - +1.6
2,439,991 - b2324 b2324 0.10 +3.4
2,440,001 - b2324 b2324 0.11 +3.4
2,440,001 - b2324 b2324 0.11 +2.5
2,440,172 + b2324 b2324 0.19 +0.9
2,440,172 + b2324 b2324 0.19 +1.0
2,440,185 - b2324 b2324 0.20 +3.5
2,440,251 - b2324 b2324 0.23 -2.1
2,440,535 + b2324 b2324 0.37 +1.2
2,440,535 + b2324 b2324 0.37 -2.4
2,440,551 + b2324 b2324 0.38 +0.6

Or see this region's nucleotide sequence