Strain Fitness in Escherichia coli BW25113 around b3822

Experiment: LB Aerobic with Nitrofurantoin 0.00003125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB Aerobic with Nitrofurantoin 0.00003125 mM
4,002,893	-				+0.5
4,002,893	-				+1.2
4,002,894	+				-0.6
4,002,894	+				-1.9
4,002,900	-				+0.8
4,002,908	-				-0.5
4,002,915	+				-0.1
4,002,915	+				-0.6
4,002,924	-				-1.1
4,002,924	-				+2.2
4,002,940	+				+2.7
4,002,946	-				+0.6
4,002,957	+				-0.2
4,002,981	-	pldA	b3821	0.11	-1.3
4,002,981	-	pldA	b3821	0.11	+0.1
4,002,984	+	pldA	b3821	0.11	-1.2
4,003,000	-	pldA	b3821	0.13	+0.5
4,003,000	-	pldA	b3821	0.13	+0.8
4,003,022	+	pldA	b3821	0.16	-0.1
4,003,022	+	pldA	b3821	0.16	+0.1
4,003,050	-	pldA	b3821	0.19	+0.3
4,003,076	+	pldA	b3821	0.22	+1.2
4,003,088	+	pldA	b3821	0.23	+1.4
4,003,250	-	pldA	b3821	0.42	-0.6
4,003,250	-	pldA	b3821	0.42	-0.8
4,003,259	+	pldA	b3821	0.43	-0.5
4,003,261	+	pldA	b3821	0.43	-0.7
4,003,348	+	pldA	b3821	0.53	-1.5
4,003,356	-	pldA	b3821	0.54	-0.6
4,003,359	+	pldA	b3821	0.54	+0.5
4,003,359	+	pldA	b3821	0.54	-0.6
4,003,367	-	pldA	b3821	0.55	-0.3
4,003,367	-	pldA	b3821	0.55	-0.5
4,003,367	-	pldA	b3821	0.55	+1.4
4,003,367	-	pldA	b3821	0.55	+0.1
4,003,389	+	pldA	b3821	0.58	+0.2
4,003,412	-	pldA	b3821	0.61	+0.0
4,003,415	+	pldA	b3821	0.61	+2.4
4,003,415	+	pldA	b3821	0.61	+0.4
4,003,472	+	pldA	b3821	0.67	+0.5
4,003,472	+	pldA	b3821	0.67	+1.0
4,003,476	+	pldA	b3821	0.68	+1.6
4,003,477	-	pldA	b3821	0.68	+1.2
4,003,477	-	pldA	b3821	0.68	+1.4
4,003,480	-	pldA	b3821	0.68	+0.1
4,003,484	-	pldA	b3821	0.69	+0.2
4,003,484	-	pldA	b3821	0.69	+0.5
4,003,489	-	pldA	b3821	0.69	-2.2
4,003,512	+	pldA	b3821	0.72	+0.6
4,003,512	+	pldA	b3821	0.72	-0.3
4,003,586	-	pldA	b3821	0.81	-1.8
4,003,614	+	pldA	b3821	0.84	+1.1
4,003,614	+	pldA	b3821	0.84	+0.5
4,003,616	+	pldA	b3821	0.84	+1.1
4,003,620	+	pldA	b3821	0.84	-1.5
4,003,632	-	pldA	b3821	0.86	+0.4
4,003,632	-	pldA	b3821	0.86	-0.2
4,003,660	-	pldA	b3821	0.89	-0.6
4,003,723	+				-0.6
4,003,731	-				+0.7
4,003,735	+				+1.9
4,003,742	-				-0.3
4,003,993	+				+0.6
4,003,993	+				-2.2
4,003,995	+				-0.2
4,003,995	+				-1.6
4,004,003	-				-0.8
4,004,003	-				-1.8
4,004,028	-				-2.4
4,004,083	+	recQ	b3822	0.11	-1.6
4,004,133	+	recQ	b3822	0.13	-1.7
4,004,197	+	recQ	b3822	0.17	-3.9
4,004,374	-	recQ	b3822	0.27	-2.1
4,004,393	-	recQ	b3822	0.28	-1.5
4,004,436	+	recQ	b3822	0.30	-1.0
4,004,478	-	recQ	b3822	0.32	-2.2
4,004,535	-	recQ	b3822	0.35	-1.1
4,004,568	-				+2.4
4,004,573	-	recQ	b3822	0.37	-2.1
4,004,586	-	recQ	b3822	0.38	-1.2
4,004,586	-	recQ	b3822	0.38	-0.4
4,004,590	+	recQ	b3822	0.38	-2.6
4,004,632	-	recQ	b3822	0.41	-0.1
4,004,632	-	recQ	b3822	0.41	+0.1
4,004,651	+	recQ	b3822	0.42	-2.3
4,004,673	-	recQ	b3822	0.43	-1.5
4,004,740	+	recQ	b3822	0.47	-2.5
4,004,740	+	recQ	b3822	0.47	-2.0
4,004,816	+	recQ	b3822	0.51	+0.4
4,004,816	+	recQ	b3822	0.51	-0.6
4,004,818	+	recQ	b3822	0.51	-0.2
4,004,868	+	recQ	b3822	0.54	-2.8
4,004,868	+	recQ	b3822	0.54	-1.6
4,004,884	+	recQ	b3822	0.54	-1.0
4,004,885	+	recQ	b3822	0.55	-1.9
4,004,908	-	recQ	b3822	0.56	-0.3
4,004,924	-	recQ	b3822	0.57	-0.2
4,004,924	-	recQ	b3822	0.57	-1.6
4,004,938	+	recQ	b3822	0.57	+0.9
4,004,970	-	recQ	b3822	0.59	-1.8
4,004,981	+	recQ	b3822	0.60	-2.6
4,004,981	+	recQ	b3822	0.60	-1.5
4,005,039	-	recQ	b3822	0.63	-0.8
4,005,064	+	recQ	b3822	0.64	-1.4
4,005,072	-	recQ	b3822	0.65	-1.5
4,005,103	+	recQ	b3822	0.66	-3.4
4,005,119	-	recQ	b3822	0.67	-1.2
4,005,129	-	recQ	b3822	0.68	-0.5
4,005,138	-	recQ	b3822	0.68	-2.3
4,005,146	+	recQ	b3822	0.69	-1.3
4,005,192	-	recQ	b3822	0.71	-0.6
4,005,198	+	recQ	b3822	0.72	-1.4
4,005,219	-	recQ	b3822	0.73	-0.6
4,005,219	-	recQ	b3822	0.73	-1.2
4,005,226	+	recQ	b3822	0.73	-0.6
4,005,226	+	recQ	b3822	0.73	-1.0
4,005,237	+	recQ	b3822	0.74	-1.8
4,005,245	+	recQ	b3822	0.74	-1.2
4,005,245	+	recQ	b3822	0.74	-1.6
4,005,366	-	recQ	b3822	0.81	-1.2
4,005,387	+	recQ	b3822	0.82	-0.0
4,005,389	+	recQ	b3822	0.82	-1.1
4,005,389	+	recQ	b3822	0.82	-1.7
4,005,481	+	recQ	b3822	0.87	-2.0
4,005,555	+				-0.7
4,005,556	-				-1.0
4,005,557	+				-1.0
4,005,573	-				-1.7
4,005,573	-				-1.5
4,005,618	-				-0.2
4,005,622	+				+0.6
4,005,622	+				+0.0
4,005,631	+				-0.2
4,005,664	-				+0.4
4,005,675	+				-0.6
4,005,675	+				-0.6
4,005,817	+				+0.4
4,005,865	-	rhtC	b3823	0.14	+1.0
4,005,997	-	rhtC	b3823	0.35	-0.2
4,005,998	+	rhtC	b3823	0.35	+1.0
4,006,017	+	rhtC	b3823	0.38	-1.6
4,006,051	+	rhtC	b3823	0.44	-0.5
4,006,103	+	rhtC	b3823	0.52	+0.8
4,006,208	+	rhtC	b3823	0.69	+0.7
4,006,244	+	rhtC	b3823	0.75	-0.9
4,006,244	+	rhtC	b3823	0.75	+0.9
4,006,275	-	rhtC	b3823	0.80	-0.6
4,006,304	+	rhtC	b3823	0.84	+0.2
4,006,323	-	rhtC	b3823	0.87	+1.0
4,006,331	+	rhtC	b3823	0.89	-2.0
4,006,420	-				-0.6
4,006,421	-				-1.3
4,006,443	-				+0.4
4,006,480	+				+1.7
4,006,480	+				-0.6
4,006,486	-				+1.1
4,006,489	-				+0.7
4,006,491	+				-0.1
4,006,501	+				+0.0
4,006,501	-				+0.4
4,006,501	-				+0.9
4,006,528	-	rhtB	b3824	0.11	+0.4
4,006,542	+	rhtB	b3824	0.13	-0.9
4,006,545	-	rhtB	b3824	0.13	+0.2
4,006,558	+	rhtB	b3824	0.15	+0.5
4,006,566	-	rhtB	b3824	0.17	+0.1
4,006,602	+	rhtB	b3824	0.23	+0.2
4,006,602	+	rhtB	b3824	0.23	-0.1
4,006,610	-	rhtB	b3824	0.24	-0.5
4,006,622	-	rhtB	b3824	0.26	-0.4
4,006,622	-	rhtB	b3824	0.26	-0.5
4,006,627	-	rhtB	b3824	0.27	+0.8
4,006,627	-	rhtB	b3824	0.27	+2.0
4,006,638	+	rhtB	b3824	0.28	-1.1
4,006,638	+	rhtB	b3824	0.28	-0.7
4,006,640	+	rhtB	b3824	0.29	+0.9
4,006,645	-	rhtB	b3824	0.29	+0.2
4,006,645	-	rhtB	b3824	0.29	+0.2
4,006,646	-	rhtB	b3824	0.30	-0.7