Strain Fitness in Escherichia coli BW25113 around b3813

Experiment: LB Aerobic with Trimethoprim 0.00000125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB Aerobic with Trimethoprim 0.00000125 mM
3,995,087	+	xerC	b3811	0.87	+0.9
3,995,093	-	xerC	b3811	0.87	-1.1
3,995,093	-	xerC	b3811	0.87	-0.1
3,995,095	-	xerC	b3811	0.88	+0.9
3,995,113	+	xerC	b3811	0.90	-0.1
3,995,165	+				-1.1
3,995,165	+				+0.9
3,995,246	+				-0.1
3,995,246	+				+0.7
3,995,251	+				+1.1
3,995,308	+	yigB	b3812	0.14	+1.2
3,995,308	+	yigB	b3812	0.14	-0.2
3,995,316	-	yigB	b3812	0.15	-0.3
3,995,338	+	yigB	b3812	0.18	+0.6
3,995,341	+	yigB	b3812	0.19	+0.5
3,995,351	-	yigB	b3812	0.20	+0.1
3,995,379	-	yigB	b3812	0.24	+0.2
3,995,391	-	yigB	b3812	0.26	+0.6
3,995,400	+	yigB	b3812	0.27	+0.6
3,995,567	+	yigB	b3812	0.50	-1.1
3,995,615	+	yigB	b3812	0.57	-1.7
3,995,615	+	yigB	b3812	0.57	-0.2
3,995,782	+	yigB	b3812	0.80	-0.3
3,995,826	-	yigB	b3812	0.86	-0.0
3,995,864	+				+1.2
3,995,875	-				-0.3
3,995,875	-				+0.7
3,995,950	-				-0.4
3,995,962	+				-0.1
3,996,013	+				+0.1
3,996,013	+				+0.1
3,996,013	+				-0.6
3,996,013	+				-1.7
3,996,013	+				-0.1
3,996,021	-				-2.3
3,996,037	+				-1.4
3,996,069	+				-2.3
3,996,095	+				-0.8
3,996,103	+				-2.5
3,996,111	-				-1.2
3,996,148	+				-0.3
3,996,150	+				-1.1
3,996,180	-				-0.7
3,996,246	+	uvrD	b3813	0.11	-0.5
3,996,246	+	uvrD	b3813	0.11	-0.4
3,996,253	+	uvrD	b3813	0.11	-1.4
3,996,256	+	uvrD	b3813	0.12	+0.6
3,996,256	+	uvrD	b3813	0.12	+0.3
3,996,280	+	uvrD	b3813	0.13	-0.6
3,996,299	+	uvrD	b3813	0.14	-0.4
3,996,316	-	uvrD	b3813	0.14	-0.4
3,996,316	-	uvrD	b3813	0.14	-1.1
3,996,342	-	uvrD	b3813	0.16	-0.6
3,996,342	-	uvrD	b3813	0.16	-0.6
3,996,398	-	uvrD	b3813	0.18	-0.5
3,996,434	+	uvrD	b3813	0.20	-2.3
3,996,462	+	uvrD	b3813	0.21	-0.6
3,996,464	-	uvrD	b3813	0.21	-0.3
3,996,464	-	uvrD	b3813	0.21	-0.3
3,996,465	-	uvrD	b3813	0.21	+0.6
3,996,488	-	uvrD	b3813	0.22	-1.7
3,996,491	+	uvrD	b3813	0.22	-0.4
3,996,504	+	uvrD	b3813	0.23	-1.4
3,996,504	+	uvrD	b3813	0.23	-0.4
3,996,517	-	uvrD	b3813	0.24	-0.9
3,996,517	-	uvrD	b3813	0.24	-1.4
3,996,522	-	uvrD	b3813	0.24	-0.3
3,996,522	-	uvrD	b3813	0.24	+1.7
3,996,606	-	uvrD	b3813	0.28	-0.9
3,996,629	+	uvrD	b3813	0.29	+0.9
3,996,632	-	uvrD	b3813	0.29	+0.9
3,996,632	-	uvrD	b3813	0.29	-1.1
3,996,654	+	uvrD	b3813	0.30	-0.8
3,996,747	+	uvrD	b3813	0.34	-0.8
3,996,762	+	uvrD	b3813	0.35	-0.4
3,996,790	+	uvrD	b3813	0.36	-0.8
3,996,790	+	uvrD	b3813	0.36	-0.2
3,996,805	+	uvrD	b3813	0.37	-1.5
3,996,859	+	uvrD	b3813	0.39	-3.7
3,996,865	+	uvrD	b3813	0.40	-0.3
3,996,865	+	uvrD	b3813	0.40	-0.1
3,996,955	-	uvrD	b3813	0.44	-1.5
3,996,955	-	uvrD	b3813	0.44	-1.7
3,997,000	-	uvrD	b3813	0.46	-1.6
3,997,044	+	uvrD	b3813	0.48	-1.3
3,997,044	+	uvrD	b3813	0.48	-2.5
3,997,052	-	uvrD	b3813	0.48	+0.1
3,997,052	-	uvrD	b3813	0.48	-1.7
3,997,097	-	uvrD	b3813	0.50	-0.3
3,997,097	-	uvrD	b3813	0.50	-0.5
3,997,115	+	uvrD	b3813	0.51	-0.1
3,997,115	+	uvrD	b3813	0.51	-1.7
3,997,229	-	uvrD	b3813	0.57	-1.4
3,997,229	-	uvrD	b3813	0.57	-0.9
3,997,255	+	uvrD	b3813	0.58	-1.1
3,997,327	+	uvrD	b3813	0.61	-0.6
3,997,410	+	uvrD	b3813	0.65	+0.1
3,997,418	-	uvrD	b3813	0.65	-0.8
3,997,439	+	uvrD	b3813	0.66	-1.0
3,997,439	+	uvrD	b3813	0.66	-0.4
3,997,443	-	uvrD	b3813	0.66	-1.5
3,997,465	+	uvrD	b3813	0.67	-0.6
3,997,465	+	uvrD	b3813	0.67	+1.9
3,997,472	+	uvrD	b3813	0.68	-0.5
3,997,482	+	uvrD	b3813	0.68	-1.1
3,997,484	-	uvrD	b3813	0.68	-1.4
3,997,484	-	uvrD	b3813	0.68	-0.1
3,997,501	-	uvrD	b3813	0.69	-0.5
3,997,501	-	uvrD	b3813	0.69	+0.3
3,997,544	-	uvrD	b3813	0.71	+1.3
3,997,544	-	uvrD	b3813	0.71	+1.2
3,997,633	-	uvrD	b3813	0.75	-0.6
3,997,670	+	uvrD	b3813	0.77	-0.7
3,997,670	+	uvrD	b3813	0.77	-0.9
3,997,670	+	uvrD	b3813	0.77	-0.1
3,997,685	-	uvrD	b3813	0.78	-0.4
3,997,685	-	uvrD	b3813	0.78	-0.8
3,997,685	-	uvrD	b3813	0.78	-1.3
3,997,685	-	uvrD	b3813	0.78	-0.7
3,997,695	+	uvrD	b3813	0.78	-1.1
3,997,731	+	uvrD	b3813	0.80	-1.4
3,997,731	+	uvrD	b3813	0.80	-1.5
3,997,771	-	uvrD	b3813	0.82	-1.9
3,997,771	-	uvrD	b3813	0.82	-1.7
3,997,809	+	uvrD	b3813	0.83	-0.7
3,997,809	+	uvrD	b3813	0.83	-3.1
3,997,817	-	uvrD	b3813	0.84	-1.5
3,997,867	+	uvrD	b3813	0.86	-0.7
3,997,904	-	uvrD	b3813	0.88	-1.6
3,997,922	-	uvrD	b3813	0.89	+0.6
3,997,952	+				-0.2
3,997,959	-				-0.4
3,997,969	+				-1.2
3,997,976	+				+0.2
3,997,976	+				+0.4
3,997,977	-				-1.1
3,998,057	-				-0.5
3,998,087	+				+0.3
3,998,087	+				-0.0
3,998,163	+				+0.7
3,998,171	-				-0.4
3,998,171	-				-0.2
3,998,171	-				-0.0
3,998,257	-				+0.4
3,998,343	-				+0.3
3,998,382	+				-0.1
3,998,420	-	yigE	b4482	0.14	+0.7
3,998,529	-	yigE	b4482	0.28	+1.5
3,998,572	+	yigE	b4482	0.34	+0.1
3,998,654	-	yigE	b4482	0.44	+0.2
3,998,658	-	yigE	b4482	0.45	-1.0
3,998,717	+	yigE	b4482	0.53	-1.7
3,998,776	-	yigE	b4482	0.60	+0.3
3,998,824	+	yigE	b4482	0.67	+0.4
3,998,866	-	yigE	b4482	0.72	-0.3
3,998,912	-	yigE	b4482	0.78	-0.1
3,998,912	-	yigE	b4482	0.78	-0.0
3,998,917	+	yigE	b4482	0.79	+0.4
3,998,939	+	yigE	b4482	0.82	-0.8
3,998,941	+	yigE	b4482	0.82	+0.2
3,998,942	-	yigE	b4482	0.82	+0.3
3,998,947	-	yigE	b4482	0.83	+0.8
3,998,947	-	yigE	b4482	0.83	+0.2
3,999,078	+				-0.0
3,999,084	-				-1.0
3,999,084	-				+0.1
3,999,127	-				-0.2
3,999,127	-				+0.2
3,999,127	-				-0.2
3,999,162	+				-0.3
3,999,167	+				+0.3