Experiment: LB Aerobic with Trimethoprim 0.00000125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt artJ and artM are separated by 290 nucleotides artM and artQ overlap by 1 nucleotides artQ and artI are separated by 6 nucleotides artI and artP are separated by 17 nucleotides
b0860: artJ - arginine transporter subunit (NCBI), at 899,067 to 899,798
artJ
b0861: artM - arginine transporter subunit (NCBI), at 900,089 to 900,757
artM
b0862: artQ - arginine transporter subunit (NCBI), at 900,757 to 901,473
artQ
b0863: artI - arginine transporter subunit (NCBI), at 901,480 to 902,211
artI
b0864: artP - arginine transporter subunit (NCBI), at 902,229 to 902,957
artP
Position (kb) 900
901
902 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 899.846 kb on - strand at 900.015 kb on + strand at 900.140 kb on - strand at 900.140 kb on - strand at 900.193 kb on + strand, within artM at 900.258 kb on - strand, within artM at 900.266 kb on - strand, within artM at 900.270 kb on - strand, within artM at 900.330 kb on - strand, within artM at 900.330 kb on - strand, within artM at 900.445 kb on + strand, within artM at 900.596 kb on - strand, within artM at 900.596 kb on - strand, within artM at 900.611 kb on - strand, within artM at 900.611 kb on - strand, within artM at 900.706 kb on + strand at 900.873 kb on + strand, within artQ at 901.049 kb on + strand, within artQ at 901.059 kb on + strand, within artQ at 901.088 kb on + strand, within artQ at 901.191 kb on + strand, within artQ at 901.191 kb on + strand, within artQ at 901.555 kb on - strand, within artI at 901.590 kb on - strand, within artI at 901.590 kb on - strand, within artI at 901.669 kb on - strand, within artI at 901.669 kb on - strand, within artI at 901.850 kb on + strand, within artI at 901.850 kb on + strand, within artI at 901.858 kb on + strand, within artI at 901.858 kb on - strand, within artI at 901.907 kb on + strand, within artI at 902.066 kb on - strand, within artI at 902.123 kb on - strand, within artI at 902.123 kb on - strand, within artI at 902.289 kb on + strand at 902.302 kb on - strand, within artP
Per-strain Table
Position Strand Gene LocusTag Fraction LB Aerobic with Trimethoprim 0.00000125 mM remove 899,846 - -2.0 900,015 + +0.1 900,140 - +0.3 900,140 - +0.1 900,193 + artM b0861 0.16 +0.8 900,258 - artM b0861 0.25 -0.4 900,266 - artM b0861 0.26 +0.2 900,270 - artM b0861 0.27 +0.0 900,330 - artM b0861 0.36 -1.0 900,330 - artM b0861 0.36 +0.1 900,445 + artM b0861 0.53 -0.2 900,596 - artM b0861 0.76 -1.8 900,596 - artM b0861 0.76 -0.6 900,611 - artM b0861 0.78 +0.1 900,611 - artM b0861 0.78 +1.9 900,706 + +0.2 900,873 + artQ b0862 0.16 +2.3 901,049 + artQ b0862 0.41 -1.7 901,059 + artQ b0862 0.42 +0.8 901,088 + artQ b0862 0.46 -0.6 901,191 + artQ b0862 0.61 -0.2 901,191 + artQ b0862 0.61 -0.4 901,555 - artI b0863 0.10 +0.5 901,590 - artI b0863 0.15 +3.5 901,590 - artI b0863 0.15 -1.9 901,669 - artI b0863 0.26 +0.3 901,669 - artI b0863 0.26 -1.4 901,850 + artI b0863 0.51 +0.3 901,850 + artI b0863 0.51 +1.3 901,858 + artI b0863 0.52 +0.6 901,858 - artI b0863 0.52 -0.1 901,907 + artI b0863 0.58 -0.5 902,066 - artI b0863 0.80 +0.1 902,123 - artI b0863 0.88 -2.0 902,123 - artI b0863 0.88 -0.9 902,289 + -0.2 902,302 - artP b0864 0.10 -0.7
Or see this region's nucleotide sequence