Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1525

Experiment: KB with Oxedrine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1524 and Psyr_1525 are separated by 471 nucleotidesPsyr_1525 and Psyr_1526 overlap by 4 nucleotidesPsyr_1526 and Psyr_1527 are separated by 36 nucleotides Psyr_1524: Psyr_1524 - conserved hypothetical protein, at 1,713,972 to 1,714,751 _1524 Psyr_1525: Psyr_1525 - conserved hypothetical protein, at 1,715,223 to 1,716,596 _1525 Psyr_1526: Psyr_1526 - hypothetical protein, at 1,716,593 to 1,717,330 _1526 Psyr_1527: Psyr_1527 - conserved hypothetical protein, at 1,717,367 to 1,719,127 _1527 Position (kb) 1715 1716 1717Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1714.305 kb on + strand, within Psyr_1524at 1714.305 kb on + strand, within Psyr_1524at 1714.305 kb on + strand, within Psyr_1524at 1714.305 kb on + strand, within Psyr_1524at 1714.305 kb on + strand, within Psyr_1524at 1714.305 kb on + strand, within Psyr_1524at 1714.305 kb on + strand, within Psyr_1524at 1714.306 kb on - strand, within Psyr_1524at 1714.306 kb on - strand, within Psyr_1524at 1714.306 kb on - strand, within Psyr_1524at 1714.306 kb on - strand, within Psyr_1524at 1714.306 kb on - strand, within Psyr_1524at 1714.306 kb on - strand, within Psyr_1524at 1714.307 kb on + strand, within Psyr_1524at 1714.307 kb on + strand, within Psyr_1524at 1714.432 kb on - strand, within Psyr_1524at 1714.443 kb on + strand, within Psyr_1524at 1714.443 kb on + strand, within Psyr_1524at 1714.443 kb on + strand, within Psyr_1524at 1714.444 kb on - strand, within Psyr_1524at 1714.444 kb on - strand, within Psyr_1524at 1714.444 kb on - strand, within Psyr_1524at 1714.472 kb on + strand, within Psyr_1524at 1714.472 kb on + strand, within Psyr_1524at 1714.536 kb on + strand, within Psyr_1524at 1714.536 kb on + strand, within Psyr_1524at 1714.536 kb on + strand, within Psyr_1524at 1714.536 kb on + strand, within Psyr_1524at 1714.536 kb on + strand, within Psyr_1524at 1714.536 kb on + strand, within Psyr_1524at 1714.536 kb on + strand, within Psyr_1524at 1714.537 kb on - strand, within Psyr_1524at 1714.537 kb on - strand, within Psyr_1524at 1714.537 kb on - strand, within Psyr_1524at 1714.537 kb on - strand, within Psyr_1524at 1714.537 kb on - strand, within Psyr_1524at 1714.537 kb on - strand, within Psyr_1524at 1714.537 kb on - strand, within Psyr_1524at 1714.538 kb on + strand, within Psyr_1524at 1714.538 kb on + strand, within Psyr_1524at 1714.539 kb on - strand, within Psyr_1524at 1714.767 kb on + strandat 1714.767 kb on + strandat 1714.769 kb on + strandat 1714.769 kb on + strandat 1714.770 kb on - strandat 1714.784 kb on - strandat 1714.809 kb on + strandat 1714.809 kb on + strandat 1714.809 kb on + strandat 1714.809 kb on + strandat 1714.810 kb on - strandat 1714.811 kb on + strandat 1714.811 kb on + strandat 1714.812 kb on - strandat 1714.825 kb on + strandat 1714.870 kb on + strandat 1715.248 kb on - strandat 1715.420 kb on + strand, within Psyr_1525at 1715.511 kb on - strand, within Psyr_1525at 1715.607 kb on - strand, within Psyr_1525at 1715.629 kb on - strand, within Psyr_1525at 1715.662 kb on - strand, within Psyr_1525at 1715.672 kb on + strand, within Psyr_1525at 1715.673 kb on - strand, within Psyr_1525at 1715.673 kb on - strand, within Psyr_1525at 1715.673 kb on - strand, within Psyr_1525at 1715.676 kb on + strand, within Psyr_1525at 1715.676 kb on + strand, within Psyr_1525at 1715.684 kb on + strand, within Psyr_1525at 1715.684 kb on + strand, within Psyr_1525at 1715.685 kb on - strand, within Psyr_1525at 1715.685 kb on - strand, within Psyr_1525at 1715.685 kb on - strand, within Psyr_1525at 1715.685 kb on - strand, within Psyr_1525at 1715.685 kb on - strand, within Psyr_1525at 1715.690 kb on + strand, within Psyr_1525at 1715.691 kb on - strand, within Psyr_1525at 1715.696 kb on + strand, within Psyr_1525at 1715.698 kb on + strand, within Psyr_1525at 1715.702 kb on + strand, within Psyr_1525at 1715.702 kb on + strand, within Psyr_1525at 1715.702 kb on + strand, within Psyr_1525at 1715.702 kb on + strand, within Psyr_1525at 1715.702 kb on + strand, within Psyr_1525at 1715.702 kb on + strand, within Psyr_1525at 1715.702 kb on + strand, within Psyr_1525at 1715.702 kb on + strand, within Psyr_1525at 1715.702 kb on + strand, within Psyr_1525at 1715.703 kb on - strand, within Psyr_1525at 1715.703 kb on - strand, within Psyr_1525at 1715.703 kb on - strand, within Psyr_1525at 1715.703 kb on - strand, within Psyr_1525at 1715.705 kb on + strand, within Psyr_1525at 1715.705 kb on + strand, within Psyr_1525at 1715.705 kb on + strand, within Psyr_1525at 1715.705 kb on + strand, within Psyr_1525at 1715.705 kb on + strand, within Psyr_1525at 1715.705 kb on + strand, within Psyr_1525at 1715.705 kb on + strand, within Psyr_1525at 1715.705 kb on + strand, within Psyr_1525at 1715.706 kb on - strand, within Psyr_1525at 1715.706 kb on - strand, within Psyr_1525at 1715.706 kb on - strand, within Psyr_1525at 1715.706 kb on - strand, within Psyr_1525at 1715.706 kb on - strand, within Psyr_1525at 1715.706 kb on - strand, within Psyr_1525at 1715.706 kb on - strand, within Psyr_1525at 1715.748 kb on + strand, within Psyr_1525at 1715.749 kb on - strand, within Psyr_1525at 1715.925 kb on - strand, within Psyr_1525at 1715.934 kb on - strand, within Psyr_1525at 1715.966 kb on + strand, within Psyr_1525at 1715.966 kb on + strand, within Psyr_1525at 1715.966 kb on + strand, within Psyr_1525at 1715.966 kb on + strand, within Psyr_1525at 1715.966 kb on + strand, within Psyr_1525at 1715.967 kb on - strand, within Psyr_1525at 1715.967 kb on - strand, within Psyr_1525at 1715.967 kb on - strand, within Psyr_1525at 1715.967 kb on - strand, within Psyr_1525at 1715.967 kb on - strand, within Psyr_1525at 1715.967 kb on - strand, within Psyr_1525at 1715.967 kb on - strand, within Psyr_1525at 1715.967 kb on - strand, within Psyr_1525at 1716.035 kb on + strand, within Psyr_1525at 1716.036 kb on - strand, within Psyr_1525at 1716.036 kb on - strand, within Psyr_1525at 1716.036 kb on - strand, within Psyr_1525at 1716.036 kb on - strand, within Psyr_1525at 1716.036 kb on - strand, within Psyr_1525at 1716.060 kb on + strand, within Psyr_1525at 1716.060 kb on + strand, within Psyr_1525at 1716.061 kb on - strand, within Psyr_1525at 1716.130 kb on + strand, within Psyr_1525at 1716.130 kb on + strand, within Psyr_1525at 1716.131 kb on - strand, within Psyr_1525at 1716.131 kb on - strand, within Psyr_1525at 1716.168 kb on + strand, within Psyr_1525at 1716.169 kb on - strand, within Psyr_1525at 1716.169 kb on - strand, within Psyr_1525at 1716.226 kb on - strand, within Psyr_1525at 1716.226 kb on - strand, within Psyr_1525at 1716.286 kb on + strand, within Psyr_1525at 1716.286 kb on + strand, within Psyr_1525at 1716.286 kb on + strand, within Psyr_1525at 1716.287 kb on - strand, within Psyr_1525at 1716.287 kb on - strand, within Psyr_1525at 1716.320 kb on + strand, within Psyr_1525at 1716.320 kb on + strand, within Psyr_1525at 1716.321 kb on - strand, within Psyr_1525at 1716.321 kb on - strand, within Psyr_1525at 1716.321 kb on - strand, within Psyr_1525at 1716.446 kb on + strand, within Psyr_1525at 1716.470 kb on + strandat 1716.471 kb on - strandat 1716.471 kb on - strandat 1716.471 kb on - strandat 1716.473 kb on + strandat 1716.474 kb on - strandat 1716.474 kb on - strandat 1716.474 kb on - strandat 1716.507 kb on + strandat 1716.508 kb on - strandat 1716.508 kb on - strandat 1716.508 kb on - strandat 1716.508 kb on - strandat 1716.555 kb on - strandat 1716.592 kb on - strandat 1716.611 kb on + strandat 1716.673 kb on + strand, within Psyr_1526at 1716.673 kb on + strand, within Psyr_1526at 1716.702 kb on - strand, within Psyr_1526at 1716.702 kb on - strand, within Psyr_1526at 1716.718 kb on + strand, within Psyr_1526at 1716.718 kb on + strand, within Psyr_1526at 1716.718 kb on + strand, within Psyr_1526at 1716.719 kb on - strand, within Psyr_1526at 1716.719 kb on - strand, within Psyr_1526at 1716.719 kb on - strand, within Psyr_1526at 1716.740 kb on + strand, within Psyr_1526at 1716.741 kb on - strand, within Psyr_1526at 1716.741 kb on - strand, within Psyr_1526at 1716.741 kb on - strand, within Psyr_1526at 1716.741 kb on - strand, within Psyr_1526at 1716.741 kb on - strand, within Psyr_1526at 1716.741 kb on - strand, within Psyr_1526at 1716.836 kb on + strand, within Psyr_1526at 1716.836 kb on + strand, within Psyr_1526at 1716.836 kb on + strand, within Psyr_1526at 1716.836 kb on + strand, within Psyr_1526at 1716.837 kb on - strand, within Psyr_1526at 1716.837 kb on - strand, within Psyr_1526at 1716.870 kb on - strand, within Psyr_1526at 1716.900 kb on + strand, within Psyr_1526at 1716.900 kb on + strand, within Psyr_1526at 1716.900 kb on + strand, within Psyr_1526at 1716.900 kb on + strand, within Psyr_1526at 1716.901 kb on - strand, within Psyr_1526at 1716.901 kb on - strand, within Psyr_1526at 1716.901 kb on - strand, within Psyr_1526at 1716.901 kb on - strand, within Psyr_1526at 1716.925 kb on + strand, within Psyr_1526at 1716.926 kb on - strand, within Psyr_1526at 1716.926 kb on - strand, within Psyr_1526at 1716.926 kb on - strand, within Psyr_1526at 1716.986 kb on + strand, within Psyr_1526at 1716.986 kb on + strand, within Psyr_1526at 1716.986 kb on + strand, within Psyr_1526at 1716.986 kb on + strand, within Psyr_1526at 1716.987 kb on - strand, within Psyr_1526at 1716.987 kb on - strand, within Psyr_1526at 1716.987 kb on - strand, within Psyr_1526at 1716.987 kb on - strand, within Psyr_1526at 1716.988 kb on - strand, within Psyr_1526at 1717.165 kb on + strand, within Psyr_1526at 1717.165 kb on + strand, within Psyr_1526at 1717.165 kb on + strand, within Psyr_1526at 1717.166 kb on - strand, within Psyr_1526at 1717.240 kb on + strand, within Psyr_1526at 1717.241 kb on - strand, within Psyr_1526at 1717.481 kb on + strandat 1717.510 kb on + strandat 1717.515 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Oxedrine 10 mM
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1,714,305 + Psyr_1524 0.43 +1.2
1,714,305 + Psyr_1524 0.43 +2.2
1,714,305 + Psyr_1524 0.43 -0.0
1,714,305 + Psyr_1524 0.43 -0.7
1,714,305 + Psyr_1524 0.43 -0.7
1,714,305 + Psyr_1524 0.43 -0.2
1,714,305 + Psyr_1524 0.43 -0.4
1,714,306 - Psyr_1524 0.43 +0.6
1,714,306 - Psyr_1524 0.43 +0.5
1,714,306 - Psyr_1524 0.43 -0.9
1,714,306 - Psyr_1524 0.43 -0.8
1,714,306 - Psyr_1524 0.43 -0.6
1,714,306 - Psyr_1524 0.43 +1.1
1,714,307 + Psyr_1524 0.43 -0.1
1,714,307 + Psyr_1524 0.43 -0.6
1,714,432 - Psyr_1524 0.59 +0.5
1,714,443 + Psyr_1524 0.60 -0.8
1,714,443 + Psyr_1524 0.60 +1.9
1,714,443 + Psyr_1524 0.60 -0.5
1,714,444 - Psyr_1524 0.61 -0.1
1,714,444 - Psyr_1524 0.61 -1.1
1,714,444 - Psyr_1524 0.61 -0.2
1,714,472 + Psyr_1524 0.64 -1.0
1,714,472 + Psyr_1524 0.64 -1.1
1,714,536 + Psyr_1524 0.72 +0.2
1,714,536 + Psyr_1524 0.72 +0.0
1,714,536 + Psyr_1524 0.72 +1.9
1,714,536 + Psyr_1524 0.72 +0.2
1,714,536 + Psyr_1524 0.72 +0.7
1,714,536 + Psyr_1524 0.72 -0.8
1,714,536 + Psyr_1524 0.72 +1.0
1,714,537 - Psyr_1524 0.72 +0.1
1,714,537 - Psyr_1524 0.72 +1.5
1,714,537 - Psyr_1524 0.72 +0.1
1,714,537 - Psyr_1524 0.72 +0.1
1,714,537 - Psyr_1524 0.72 +0.1
1,714,537 - Psyr_1524 0.72 +1.1
1,714,537 - Psyr_1524 0.72 -0.0
1,714,538 + Psyr_1524 0.73 -1.7
1,714,538 + Psyr_1524 0.73 +0.3
1,714,539 - Psyr_1524 0.73 +0.9
1,714,767 + +0.8
1,714,767 + +0.6
1,714,769 + +0.1
1,714,769 + +0.7
1,714,770 - -0.3
1,714,784 - +0.0
1,714,809 + -0.6
1,714,809 + -2.0
1,714,809 + +0.1
1,714,809 + +0.4
1,714,810 - +0.8
1,714,811 + -0.4
1,714,811 + -0.4
1,714,812 - +0.1
1,714,825 + +0.4
1,714,870 + -1.7
1,715,248 - +0.9
1,715,420 + Psyr_1525 0.14 -1.5
1,715,511 - Psyr_1525 0.21 +0.2
1,715,607 - Psyr_1525 0.28 -1.9
1,715,629 - Psyr_1525 0.30 -0.4
1,715,662 - Psyr_1525 0.32 -1.2
1,715,672 + Psyr_1525 0.33 +0.3
1,715,673 - Psyr_1525 0.33 +0.9
1,715,673 - Psyr_1525 0.33 -0.6
1,715,673 - Psyr_1525 0.33 -2.4
1,715,676 + Psyr_1525 0.33 -0.6
1,715,676 + Psyr_1525 0.33 -0.4
1,715,684 + Psyr_1525 0.34 +0.1
1,715,684 + Psyr_1525 0.34 +0.2
1,715,685 - Psyr_1525 0.34 -1.3
1,715,685 - Psyr_1525 0.34 -0.9
1,715,685 - Psyr_1525 0.34 -0.0
1,715,685 - Psyr_1525 0.34 -2.0
1,715,685 - Psyr_1525 0.34 +0.1
1,715,690 + Psyr_1525 0.34 +1.0
1,715,691 - Psyr_1525 0.34 +1.5
1,715,696 + Psyr_1525 0.34 -0.3
1,715,698 + Psyr_1525 0.35 +0.3
1,715,702 + Psyr_1525 0.35 +0.2
1,715,702 + Psyr_1525 0.35 -0.5
1,715,702 + Psyr_1525 0.35 +0.3
1,715,702 + Psyr_1525 0.35 +0.5
1,715,702 + Psyr_1525 0.35 -0.8
1,715,702 + Psyr_1525 0.35 +0.8
1,715,702 + Psyr_1525 0.35 +1.2
1,715,702 + Psyr_1525 0.35 +0.2
1,715,702 + Psyr_1525 0.35 +0.5
1,715,703 - Psyr_1525 0.35 +1.5
1,715,703 - Psyr_1525 0.35 -0.9
1,715,703 - Psyr_1525 0.35 -0.6
1,715,703 - Psyr_1525 0.35 +0.9
1,715,705 + Psyr_1525 0.35 -0.5
1,715,705 + Psyr_1525 0.35 +0.6
1,715,705 + Psyr_1525 0.35 +0.4
1,715,705 + Psyr_1525 0.35 -1.0
1,715,705 + Psyr_1525 0.35 -0.1
1,715,705 + Psyr_1525 0.35 -0.0
1,715,705 + Psyr_1525 0.35 +0.2
1,715,705 + Psyr_1525 0.35 -0.2
1,715,706 - Psyr_1525 0.35 +1.1
1,715,706 - Psyr_1525 0.35 -1.2
1,715,706 - Psyr_1525 0.35 +1.5
1,715,706 - Psyr_1525 0.35 +0.9
1,715,706 - Psyr_1525 0.35 -0.3
1,715,706 - Psyr_1525 0.35 -1.5
1,715,706 - Psyr_1525 0.35 +1.1
1,715,748 + Psyr_1525 0.38 -0.3
1,715,749 - Psyr_1525 0.38 +0.5
1,715,925 - Psyr_1525 0.51 +0.6
1,715,934 - Psyr_1525 0.52 +0.3
1,715,966 + Psyr_1525 0.54 -0.1
1,715,966 + Psyr_1525 0.54 +0.5
1,715,966 + Psyr_1525 0.54 +1.2
1,715,966 + Psyr_1525 0.54 +1.9
1,715,966 + Psyr_1525 0.54 -0.6
1,715,967 - Psyr_1525 0.54 +0.5
1,715,967 - Psyr_1525 0.54 +0.9
1,715,967 - Psyr_1525 0.54 +0.3
1,715,967 - Psyr_1525 0.54 +0.5
1,715,967 - Psyr_1525 0.54 -0.7
1,715,967 - Psyr_1525 0.54 +1.1
1,715,967 - Psyr_1525 0.54 +0.7
1,715,967 - Psyr_1525 0.54 -0.8
1,716,035 + Psyr_1525 0.59 -2.8
1,716,036 - Psyr_1525 0.59 -0.4
1,716,036 - Psyr_1525 0.59 -1.1
1,716,036 - Psyr_1525 0.59 +0.1
1,716,036 - Psyr_1525 0.59 -0.0
1,716,036 - Psyr_1525 0.59 +0.1
1,716,060 + Psyr_1525 0.61 +0.7
1,716,060 + Psyr_1525 0.61 +0.2
1,716,061 - Psyr_1525 0.61 -2.2
1,716,130 + Psyr_1525 0.66 +0.1
1,716,130 + Psyr_1525 0.66 -0.8
1,716,131 - Psyr_1525 0.66 -2.7
1,716,131 - Psyr_1525 0.66 +1.7
1,716,168 + Psyr_1525 0.69 +2.2
1,716,169 - Psyr_1525 0.69 -0.2
1,716,169 - Psyr_1525 0.69 +0.1
1,716,226 - Psyr_1525 0.73 +0.3
1,716,226 - Psyr_1525 0.73 +0.7
1,716,286 + Psyr_1525 0.77 -0.6
1,716,286 + Psyr_1525 0.77 +0.9
1,716,286 + Psyr_1525 0.77 -0.6
1,716,287 - Psyr_1525 0.77 +0.8
1,716,287 - Psyr_1525 0.77 +0.9
1,716,320 + Psyr_1525 0.80 -0.7
1,716,320 + Psyr_1525 0.80 -2.6
1,716,321 - Psyr_1525 0.80 +0.2
1,716,321 - Psyr_1525 0.80 -0.3
1,716,321 - Psyr_1525 0.80 +0.1
1,716,446 + Psyr_1525 0.89 -0.1
1,716,470 + +0.2
1,716,471 - +1.3
1,716,471 - -0.0
1,716,471 - -0.9
1,716,473 + +0.2
1,716,474 - +0.2
1,716,474 - +0.7
1,716,474 - -1.0
1,716,507 + +0.2
1,716,508 - +0.8
1,716,508 - -1.7
1,716,508 - -0.4
1,716,508 - -1.0
1,716,555 - +0.7
1,716,592 - +0.9
1,716,611 + -0.2
1,716,673 + Psyr_1526 0.11 -0.8
1,716,673 + Psyr_1526 0.11 +0.5
1,716,702 - Psyr_1526 0.15 -0.3
1,716,702 - Psyr_1526 0.15 -1.2
1,716,718 + Psyr_1526 0.17 -0.8
1,716,718 + Psyr_1526 0.17 +0.7
1,716,718 + Psyr_1526 0.17 -1.5
1,716,719 - Psyr_1526 0.17 -0.3
1,716,719 - Psyr_1526 0.17 +0.5
1,716,719 - Psyr_1526 0.17 +0.5
1,716,740 + Psyr_1526 0.20 -0.8
1,716,741 - Psyr_1526 0.20 -2.5
1,716,741 - Psyr_1526 0.20 -0.9
1,716,741 - Psyr_1526 0.20 -0.8
1,716,741 - Psyr_1526 0.20 +0.3
1,716,741 - Psyr_1526 0.20 -0.5
1,716,741 - Psyr_1526 0.20 +0.4
1,716,836 + Psyr_1526 0.33 -0.1
1,716,836 + Psyr_1526 0.33 -0.8
1,716,836 + Psyr_1526 0.33 -0.2
1,716,836 + Psyr_1526 0.33 -0.5
1,716,837 - Psyr_1526 0.33 +1.6
1,716,837 - Psyr_1526 0.33 +0.4
1,716,870 - Psyr_1526 0.38 +0.1
1,716,900 + Psyr_1526 0.42 -1.8
1,716,900 + Psyr_1526 0.42 -1.8
1,716,900 + Psyr_1526 0.42 -0.8
1,716,900 + Psyr_1526 0.42 -1.1
1,716,901 - Psyr_1526 0.42 +0.6
1,716,901 - Psyr_1526 0.42 +0.4
1,716,901 - Psyr_1526 0.42 -0.0
1,716,901 - Psyr_1526 0.42 +0.6
1,716,925 + Psyr_1526 0.45 -0.5
1,716,926 - Psyr_1526 0.45 +0.2
1,716,926 - Psyr_1526 0.45 +1.0
1,716,926 - Psyr_1526 0.45 +1.9
1,716,986 + Psyr_1526 0.53 +0.4
1,716,986 + Psyr_1526 0.53 -0.4
1,716,986 + Psyr_1526 0.53 -0.3
1,716,986 + Psyr_1526 0.53 +0.5
1,716,987 - Psyr_1526 0.53 +1.2
1,716,987 - Psyr_1526 0.53 -0.4
1,716,987 - Psyr_1526 0.53 +1.1
1,716,987 - Psyr_1526 0.53 -0.3
1,716,988 - Psyr_1526 0.54 -0.8
1,717,165 + Psyr_1526 0.78 +0.5
1,717,165 + Psyr_1526 0.78 +0.6
1,717,165 + Psyr_1526 0.78 +0.3
1,717,166 - Psyr_1526 0.78 +0.6
1,717,240 + Psyr_1526 0.88 -1.2
1,717,241 - Psyr_1526 0.88 +0.4
1,717,481 + +0.5
1,717,510 + -0.4
1,717,515 - -0.8

Or see this region's nucleotide sequence