Experiment: KB with Oxedrine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0865 and Psyr_0866 are separated by 65 nucleotides Psyr_0866 and Psyr_0867 are separated by 86 nucleotides Psyr_0867 and Psyr_0868 are separated by 257 nucleotides
Psyr_0865: Psyr_0865 - General substrate transporter:Major facilitator superfamily, at 984,855 to 986,063
_0865
Psyr_0866: Psyr_0866 - CDP-diacylglycerol-choline O-phosphatidyltransferase, at 986,129 to 986,848
_0866
Psyr_0867: Psyr_0867 - conserved hypothetical protein, at 986,935 to 988,947
_0867
Psyr_0868: Psyr_0868 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 989,205 to 990,845
_0868
Position (kb) 986
987
988
989 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 986.001 kb on + strand at 986.001 kb on + strand at 986.002 kb on - strand at 986.002 kb on - strand at 986.062 kb on - strand at 986.072 kb on + strand at 986.072 kb on + strand at 986.073 kb on - strand at 986.190 kb on + strand at 986.250 kb on - strand, within Psyr_0866 at 986.250 kb on - strand, within Psyr_0866 at 986.276 kb on + strand, within Psyr_0866 at 986.412 kb on + strand, within Psyr_0866 at 986.412 kb on + strand, within Psyr_0866 at 986.413 kb on - strand, within Psyr_0866 at 986.413 kb on - strand, within Psyr_0866 at 986.460 kb on + strand, within Psyr_0866 at 986.460 kb on + strand, within Psyr_0866 at 986.461 kb on - strand, within Psyr_0866 at 986.461 kb on - strand, within Psyr_0866 at 986.461 kb on - strand, within Psyr_0866 at 986.461 kb on - strand, within Psyr_0866 at 986.558 kb on + strand, within Psyr_0866 at 986.559 kb on - strand, within Psyr_0866 at 986.559 kb on - strand, within Psyr_0866 at 986.560 kb on + strand, within Psyr_0866 at 986.560 kb on + strand, within Psyr_0866 at 986.560 kb on + strand, within Psyr_0866 at 986.560 kb on + strand, within Psyr_0866 at 986.560 kb on + strand, within Psyr_0866 at 986.561 kb on - strand, within Psyr_0866 at 986.562 kb on + strand, within Psyr_0866 at 986.562 kb on + strand, within Psyr_0866 at 986.562 kb on + strand, within Psyr_0866 at 986.563 kb on - strand, within Psyr_0866 at 986.563 kb on - strand, within Psyr_0866 at 986.568 kb on + strand, within Psyr_0866 at 986.568 kb on + strand, within Psyr_0866 at 986.569 kb on - strand, within Psyr_0866 at 986.569 kb on - strand, within Psyr_0866 at 986.569 kb on - strand, within Psyr_0866 at 986.569 kb on - strand, within Psyr_0866 at 986.569 kb on - strand, within Psyr_0866 at 986.569 kb on - strand, within Psyr_0866 at 986.595 kb on + strand, within Psyr_0866 at 986.595 kb on + strand, within Psyr_0866 at 986.595 kb on + strand, within Psyr_0866 at 986.595 kb on + strand, within Psyr_0866 at 986.595 kb on + strand, within Psyr_0866 at 986.595 kb on + strand, within Psyr_0866 at 986.595 kb on + strand, within Psyr_0866 at 986.595 kb on + strand, within Psyr_0866 at 986.596 kb on - strand, within Psyr_0866 at 986.596 kb on - strand, within Psyr_0866 at 986.596 kb on - strand, within Psyr_0866 at 986.596 kb on - strand, within Psyr_0866 at 986.596 kb on - strand, within Psyr_0866 at 986.596 kb on - strand, within Psyr_0866 at 986.780 kb on + strand at 986.781 kb on - strand at 986.828 kb on + strand at 986.868 kb on + strand at 986.868 kb on + strand at 986.868 kb on + strand at 986.869 kb on - strand at 986.869 kb on - strand at 986.869 kb on - strand at 986.869 kb on - strand at 986.869 kb on - strand at 986.869 kb on - strand at 986.946 kb on + strand at 987.008 kb on + strand at 987.008 kb on + strand at 987.008 kb on + strand at 987.008 kb on + strand at 987.009 kb on - strand at 987.009 kb on - strand at 987.009 kb on - strand at 987.009 kb on - strand at 987.033 kb on + strand at 987.034 kb on - strand at 987.034 kb on - strand at 987.034 kb on - strand at 987.034 kb on - strand at 987.097 kb on + strand at 987.098 kb on - strand at 987.098 kb on - strand at 987.198 kb on + strand, within Psyr_0867 at 987.198 kb on + strand, within Psyr_0867 at 987.198 kb on + strand, within Psyr_0867 at 987.199 kb on - strand, within Psyr_0867 at 987.199 kb on - strand, within Psyr_0867 at 987.199 kb on - strand, within Psyr_0867 at 987.218 kb on + strand, within Psyr_0867 at 987.218 kb on + strand, within Psyr_0867 at 987.218 kb on + strand, within Psyr_0867 at 987.218 kb on + strand, within Psyr_0867 at 987.218 kb on + strand, within Psyr_0867 at 987.218 kb on + strand, within Psyr_0867 at 987.218 kb on + strand, within Psyr_0867 at 987.218 kb on + strand, within Psyr_0867 at 987.218 kb on + strand, within Psyr_0867 at 987.218 kb on + strand, within Psyr_0867 at 987.218 kb on + strand, within Psyr_0867 at 987.219 kb on - strand, within Psyr_0867 at 987.219 kb on - strand, within Psyr_0867 at 987.219 kb on - strand, within Psyr_0867 at 987.219 kb on - strand, within Psyr_0867 at 987.219 kb on - strand, within Psyr_0867 at 987.219 kb on - strand, within Psyr_0867 at 987.220 kb on + strand, within Psyr_0867 at 987.303 kb on + strand, within Psyr_0867 at 987.303 kb on + strand, within Psyr_0867 at 987.304 kb on - strand, within Psyr_0867 at 987.304 kb on - strand, within Psyr_0867 at 987.354 kb on - strand, within Psyr_0867 at 987.380 kb on + strand, within Psyr_0867 at 987.380 kb on + strand, within Psyr_0867 at 987.380 kb on + strand, within Psyr_0867 at 987.381 kb on - strand, within Psyr_0867 at 987.671 kb on - strand, within Psyr_0867 at 987.701 kb on + strand, within Psyr_0867 at 987.701 kb on + strand, within Psyr_0867 at 987.701 kb on + strand, within Psyr_0867 at 987.701 kb on + strand, within Psyr_0867 at 987.702 kb on - strand, within Psyr_0867 at 987.702 kb on - strand, within Psyr_0867 at 987.702 kb on - strand, within Psyr_0867 at 987.863 kb on + strand, within Psyr_0867 at 987.864 kb on - strand, within Psyr_0867 at 988.061 kb on + strand, within Psyr_0867 at 988.061 kb on + strand, within Psyr_0867 at 988.142 kb on + strand, within Psyr_0867 at 988.143 kb on - strand, within Psyr_0867 at 988.143 kb on - strand, within Psyr_0867 at 988.143 kb on - strand, within Psyr_0867 at 988.284 kb on - strand, within Psyr_0867 at 988.286 kb on + strand, within Psyr_0867 at 988.286 kb on + strand, within Psyr_0867 at 988.286 kb on + strand, within Psyr_0867 at 988.287 kb on - strand, within Psyr_0867 at 988.287 kb on - strand, within Psyr_0867 at 988.287 kb on - strand, within Psyr_0867 at 988.287 kb on - strand, within Psyr_0867 at 988.305 kb on - strand, within Psyr_0867 at 988.418 kb on + strand, within Psyr_0867 at 988.474 kb on - strand, within Psyr_0867 at 988.601 kb on + strand, within Psyr_0867 at 988.740 kb on + strand, within Psyr_0867 at 988.766 kb on - strand at 988.766 kb on - strand at 988.770 kb on - strand at 988.770 kb on - strand at 988.770 kb on - strand at 988.770 kb on - strand at 988.801 kb on - strand at 988.824 kb on + strand at 988.955 kb on + strand at 988.956 kb on - strand at 989.014 kb on + strand at 989.015 kb on - strand at 989.081 kb on + strand at 989.081 kb on + strand at 989.082 kb on - strand at 989.129 kb on + strand at 989.129 kb on + strand at 989.130 kb on - strand at 989.130 kb on - strand at 989.130 kb on - strand at 989.130 kb on - strand at 989.130 kb on - strand at 989.130 kb on - strand at 989.130 kb on - strand at 989.130 kb on - strand at 989.135 kb on + strand at 989.135 kb on + strand at 989.135 kb on + strand at 989.136 kb on - strand at 989.136 kb on - strand at 989.136 kb on - strand at 989.136 kb on - strand at 989.136 kb on - strand at 989.136 kb on - strand at 989.136 kb on - strand at 989.159 kb on + strand at 989.205 kb on - strand at 989.218 kb on - strand at 989.218 kb on - strand at 989.290 kb on + strand at 989.290 kb on + strand at 989.290 kb on + strand at 989.291 kb on - strand at 989.293 kb on + strand at 989.294 kb on - strand at 989.294 kb on - strand at 989.343 kb on - strand at 989.469 kb on - strand, within Psyr_0868 at 989.674 kb on + strand, within Psyr_0868 at 989.674 kb on + strand, within Psyr_0868 at 989.674 kb on + strand, within Psyr_0868 at 989.674 kb on + strand, within Psyr_0868 at 989.675 kb on - strand, within Psyr_0868 at 989.675 kb on - strand, within Psyr_0868 at 989.675 kb on - strand, within Psyr_0868 at 989.675 kb on - strand, within Psyr_0868 at 989.675 kb on - strand, within Psyr_0868 at 989.675 kb on - strand, within Psyr_0868 at 989.717 kb on - strand, within Psyr_0868 at 989.717 kb on - strand, within Psyr_0868 at 989.729 kb on + strand, within Psyr_0868 at 989.729 kb on + strand, within Psyr_0868 at 989.796 kb on + strand, within Psyr_0868 at 989.796 kb on + strand, within Psyr_0868 at 989.796 kb on + strand, within Psyr_0868 at 989.796 kb on + strand, within Psyr_0868 at 989.797 kb on - strand, within Psyr_0868 at 989.797 kb on - strand, within Psyr_0868 at 989.797 kb on - strand, within Psyr_0868 at 989.848 kb on + strand, within Psyr_0868 at 989.848 kb on + strand, within Psyr_0868 at 989.848 kb on + strand, within Psyr_0868 at 989.848 kb on + strand, within Psyr_0868 at 989.849 kb on - strand, within Psyr_0868 at 989.849 kb on - strand, within Psyr_0868 at 989.849 kb on - strand, within Psyr_0868 at 989.849 kb on - strand, within Psyr_0868 at 989.849 kb on - strand, within Psyr_0868 at 989.849 kb on - strand, within Psyr_0868
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Oxedrine 10 mM remove 986,001 + -0.1 986,001 + +1.8 986,002 - +0.1 986,002 - -0.9 986,062 - +0.4 986,072 + +0.4 986,072 + +0.1 986,073 - -1.2 986,190 + +1.4 986,250 - Psyr_0866 0.17 -0.1 986,250 - Psyr_0866 0.17 +1.5 986,276 + Psyr_0866 0.20 +0.9 986,412 + Psyr_0866 0.39 +0.3 986,412 + Psyr_0866 0.39 +0.2 986,413 - Psyr_0866 0.39 -1.0 986,413 - Psyr_0866 0.39 +0.1 986,460 + Psyr_0866 0.46 +0.6 986,460 + Psyr_0866 0.46 +0.8 986,461 - Psyr_0866 0.46 -1.2 986,461 - Psyr_0866 0.46 +0.4 986,461 - Psyr_0866 0.46 +0.9 986,461 - Psyr_0866 0.46 -0.2 986,558 + Psyr_0866 0.60 +0.5 986,559 - Psyr_0866 0.60 -0.2 986,559 - Psyr_0866 0.60 +0.4 986,560 + Psyr_0866 0.60 -1.5 986,560 + Psyr_0866 0.60 +0.9 986,560 + Psyr_0866 0.60 +0.1 986,560 + Psyr_0866 0.60 +0.6 986,560 + Psyr_0866 0.60 -0.8 986,561 - Psyr_0866 0.60 +1.2 986,562 + Psyr_0866 0.60 -1.1 986,562 + Psyr_0866 0.60 -0.2 986,562 + Psyr_0866 0.60 +0.6 986,563 - Psyr_0866 0.60 -1.4 986,563 - Psyr_0866 0.60 +5.0 986,568 + Psyr_0866 0.61 -0.5 986,568 + Psyr_0866 0.61 +0.4 986,569 - Psyr_0866 0.61 -1.2 986,569 - Psyr_0866 0.61 -1.1 986,569 - Psyr_0866 0.61 -1.9 986,569 - Psyr_0866 0.61 -1.9 986,569 - Psyr_0866 0.61 -0.8 986,569 - Psyr_0866 0.61 -0.0 986,595 + Psyr_0866 0.65 +0.6 986,595 + Psyr_0866 0.65 +1.1 986,595 + Psyr_0866 0.65 -0.2 986,595 + Psyr_0866 0.65 +0.9 986,595 + Psyr_0866 0.65 +1.0 986,595 + Psyr_0866 0.65 -0.5 986,595 + Psyr_0866 0.65 +1.7 986,595 + Psyr_0866 0.65 -0.1 986,596 - Psyr_0866 0.65 +0.1 986,596 - Psyr_0866 0.65 +0.6 986,596 - Psyr_0866 0.65 +0.1 986,596 - Psyr_0866 0.65 +2.4 986,596 - Psyr_0866 0.65 +0.1 986,596 - Psyr_0866 0.65 -0.8 986,780 + -0.7 986,781 - -0.6 986,828 + +0.0 986,868 + +0.1 986,868 + +0.4 986,868 + +0.2 986,869 - +1.1 986,869 - +0.7 986,869 - -0.2 986,869 - -0.3 986,869 - -1.3 986,869 - -0.3 986,946 + -0.1 987,008 + -0.3 987,008 + -0.4 987,008 + +0.6 987,008 + -0.3 987,009 - +0.6 987,009 - -0.2 987,009 - -0.6 987,009 - +0.3 987,033 + -0.1 987,034 - -0.1 987,034 - +0.2 987,034 - +1.0 987,034 - -1.0 987,097 + -2.6 987,098 - -2.2 987,098 - -0.1 987,198 + Psyr_0867 0.13 -0.1 987,198 + Psyr_0867 0.13 +1.4 987,198 + Psyr_0867 0.13 +0.8 987,199 - Psyr_0867 0.13 -1.2 987,199 - Psyr_0867 0.13 +0.3 987,199 - Psyr_0867 0.13 -0.5 987,218 + Psyr_0867 0.14 -1.1 987,218 + Psyr_0867 0.14 -0.4 987,218 + Psyr_0867 0.14 +0.5 987,218 + Psyr_0867 0.14 +0.5 987,218 + Psyr_0867 0.14 -0.8 987,218 + Psyr_0867 0.14 +0.6 987,218 + Psyr_0867 0.14 +0.6 987,218 + Psyr_0867 0.14 +0.8 987,218 + Psyr_0867 0.14 -0.5 987,218 + Psyr_0867 0.14 -1.6 987,218 + Psyr_0867 0.14 +2.4 987,219 - Psyr_0867 0.14 -0.4 987,219 - Psyr_0867 0.14 -1.3 987,219 - Psyr_0867 0.14 +0.1 987,219 - Psyr_0867 0.14 +0.3 987,219 - Psyr_0867 0.14 -0.4 987,219 - Psyr_0867 0.14 -0.8 987,220 + Psyr_0867 0.14 +0.3 987,303 + Psyr_0867 0.18 -0.9 987,303 + Psyr_0867 0.18 -0.0 987,304 - Psyr_0867 0.18 -1.1 987,304 - Psyr_0867 0.18 -2.3 987,354 - Psyr_0867 0.21 -3.1 987,380 + Psyr_0867 0.22 -0.2 987,380 + Psyr_0867 0.22 -1.5 987,380 + Psyr_0867 0.22 +0.8 987,381 - Psyr_0867 0.22 +0.4 987,671 - Psyr_0867 0.37 -0.2 987,701 + Psyr_0867 0.38 -0.2 987,701 + Psyr_0867 0.38 -0.5 987,701 + Psyr_0867 0.38 +0.2 987,701 + Psyr_0867 0.38 -0.4 987,702 - Psyr_0867 0.38 -0.2 987,702 - Psyr_0867 0.38 -0.4 987,702 - Psyr_0867 0.38 -0.1 987,863 + Psyr_0867 0.46 +0.2 987,864 - Psyr_0867 0.46 -0.4 988,061 + Psyr_0867 0.56 -0.1 988,061 + Psyr_0867 0.56 +0.3 988,142 + Psyr_0867 0.60 -0.6 988,143 - Psyr_0867 0.60 -0.1 988,143 - Psyr_0867 0.60 +0.2 988,143 - Psyr_0867 0.60 -0.4 988,284 - Psyr_0867 0.67 +0.6 988,286 + Psyr_0867 0.67 +1.0 988,286 + Psyr_0867 0.67 -1.3 988,286 + Psyr_0867 0.67 +0.6 988,287 - Psyr_0867 0.67 -0.2 988,287 - Psyr_0867 0.67 +0.1 988,287 - Psyr_0867 0.67 -1.0 988,287 - Psyr_0867 0.67 +0.9 988,305 - Psyr_0867 0.68 +0.1 988,418 + Psyr_0867 0.74 +0.1 988,474 - Psyr_0867 0.76 -0.8 988,601 + Psyr_0867 0.83 +0.8 988,740 + Psyr_0867 0.90 +0.2 988,766 - +0.5 988,766 - +0.3 988,770 - +0.3 988,770 - -0.2 988,770 - -0.8 988,770 - -0.0 988,801 - +1.1 988,824 + +0.4 988,955 + +0.9 988,956 - +1.4 989,014 + -0.4 989,015 - -1.5 989,081 + -0.3 989,081 + +0.1 989,082 - -0.4 989,129 + -0.5 989,129 + +1.2 989,130 - -0.4 989,130 - +0.3 989,130 - +0.4 989,130 - +0.4 989,130 - +0.7 989,130 - -0.2 989,130 - +0.2 989,130 - +0.8 989,135 + -0.7 989,135 + -0.3 989,135 + +0.1 989,136 - -3.2 989,136 - +0.6 989,136 - +0.2 989,136 - -1.1 989,136 - -0.2 989,136 - +0.1 989,136 - -0.6 989,159 + -0.7 989,205 - -0.4 989,218 - +1.0 989,218 - -0.9 989,290 + +0.1 989,290 + +0.1 989,290 + +1.5 989,291 - -1.1 989,293 + -0.8 989,294 - +0.6 989,294 - -0.0 989,343 - -0.5 989,469 - Psyr_0868 0.16 +0.8 989,674 + Psyr_0868 0.29 -0.1 989,674 + Psyr_0868 0.29 +0.5 989,674 + Psyr_0868 0.29 -0.1 989,674 + Psyr_0868 0.29 +0.9 989,675 - Psyr_0868 0.29 -0.1 989,675 - Psyr_0868 0.29 +0.1 989,675 - Psyr_0868 0.29 +0.6 989,675 - Psyr_0868 0.29 +0.1 989,675 - Psyr_0868 0.29 -0.8 989,675 - Psyr_0868 0.29 +0.1 989,717 - Psyr_0868 0.31 -0.2 989,717 - Psyr_0868 0.31 -0.0 989,729 + Psyr_0868 0.32 -0.5 989,729 + Psyr_0868 0.32 +1.1 989,796 + Psyr_0868 0.36 -1.1 989,796 + Psyr_0868 0.36 -0.2 989,796 + Psyr_0868 0.36 +0.0 989,796 + Psyr_0868 0.36 -1.2 989,797 - Psyr_0868 0.36 +0.1 989,797 - Psyr_0868 0.36 +0.9 989,797 - Psyr_0868 0.36 +0.2 989,848 + Psyr_0868 0.39 -1.5 989,848 + Psyr_0868 0.39 -0.3 989,848 + Psyr_0868 0.39 -0.0 989,848 + Psyr_0868 0.39 +1.7 989,849 - Psyr_0868 0.39 -0.2 989,849 - Psyr_0868 0.39 -1.0 989,849 - Psyr_0868 0.39 +0.4 989,849 - Psyr_0868 0.39 +1.2 989,849 - Psyr_0868 0.39 -0.1 989,849 - Psyr_0868 0.39 -0.3
Or see this region's nucleotide sequence