Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0769

Experiment: KB with Oxedrine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0767 and Psyr_0768 are separated by 168 nucleotidesPsyr_0768 and Psyr_0769 are separated by 201 nucleotidesPsyr_0769 and Psyr_0770 are separated by 14 nucleotidesPsyr_0770 and Psyr_0771 are separated by 264 nucleotides Psyr_0767: Psyr_0767 - transcriptional regulator, LysR family, at 872,972 to 873,892 _0767 Psyr_0768: Psyr_0768 - conserved hypothetical protein, at 874,061 to 874,216 _0768 Psyr_0769: Psyr_0769 - conserved hypothetical membrane-anchored protein, at 874,418 to 874,861 _0769 Psyr_0770: Psyr_0770 - conserved hypothetical protein, at 874,876 to 875,334 _0770 Psyr_0771: Psyr_0771 - acetylornithine deacetylase, at 875,599 to 876,741 _0771 Position (kb) 874 875Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 873.439 kb on + strand, within Psyr_0767at 873.439 kb on + strand, within Psyr_0767at 873.753 kb on + strand, within Psyr_0767at 873.753 kb on + strand, within Psyr_0767at 873.753 kb on + strand, within Psyr_0767at 873.754 kb on - strand, within Psyr_0767at 873.754 kb on - strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.779 kb on + strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 873.780 kb on - strand, within Psyr_0767at 874.075 kb on + strandat 874.076 kb on - strandat 874.165 kb on + strand, within Psyr_0768at 874.166 kb on - strand, within Psyr_0768at 874.214 kb on + strandat 874.214 kb on + strandat 874.215 kb on - strandat 874.431 kb on - strandat 874.439 kb on + strandat 874.771 kb on + strand, within Psyr_0769at 874.771 kb on + strand, within Psyr_0769at 874.772 kb on - strand, within Psyr_0769at 874.830 kb on + strandat 874.861 kb on + strandat 874.861 kb on + strandat 874.877 kb on + strandat 874.883 kb on + strandat 874.887 kb on + strandat 874.888 kb on - strandat 874.888 kb on - strandat 874.888 kb on - strandat 874.923 kb on + strand, within Psyr_0770at 874.923 kb on + strand, within Psyr_0770at 874.924 kb on - strand, within Psyr_0770at 874.924 kb on - strand, within Psyr_0770at 874.924 kb on - strand, within Psyr_0770at 874.973 kb on + strand, within Psyr_0770at 874.973 kb on + strand, within Psyr_0770at 874.974 kb on - strand, within Psyr_0770at 874.984 kb on + strand, within Psyr_0770at 875.149 kb on - strand, within Psyr_0770at 875.183 kb on + strand, within Psyr_0770at 875.183 kb on + strand, within Psyr_0770at 875.183 kb on + strand, within Psyr_0770at 875.183 kb on + strand, within Psyr_0770at 875.183 kb on + strand, within Psyr_0770at 875.269 kb on + strand, within Psyr_0770at 875.275 kb on + strand, within Psyr_0770at 875.275 kb on + strand, within Psyr_0770at 875.275 kb on + strand, within Psyr_0770at 875.275 kb on + strand, within Psyr_0770at 875.276 kb on - strand, within Psyr_0770at 875.276 kb on - strand, within Psyr_0770at 875.276 kb on - strand, within Psyr_0770at 875.276 kb on - strand, within Psyr_0770at 875.276 kb on - strand, within Psyr_0770at 875.334 kb on + strandat 875.335 kb on - strandat 875.395 kb on + strandat 875.432 kb on + strandat 875.441 kb on + strandat 875.441 kb on + strandat 875.442 kb on - strandat 875.442 kb on - strandat 875.442 kb on - strandat 875.442 kb on - strandat 875.478 kb on + strandat 875.478 kb on + strandat 875.478 kb on + strandat 875.478 kb on + strandat 875.478 kb on + strandat 875.479 kb on - strandat 875.495 kb on + strandat 875.495 kb on + strandat 875.571 kb on + strandat 875.571 kb on + strandat 875.571 kb on + strandat 875.590 kb on + strandat 875.591 kb on - strandat 875.591 kb on - strandat 875.591 kb on - strandat 875.591 kb on - strandat 875.591 kb on - strandat 875.651 kb on + strandat 875.652 kb on - strandat 875.652 kb on - strandat 875.652 kb on - strandat 875.690 kb on + strandat 875.690 kb on + strandat 875.691 kb on - strandat 875.785 kb on - strand, within Psyr_0771at 875.789 kb on + strand, within Psyr_0771at 875.789 kb on + strand, within Psyr_0771at 875.789 kb on + strand, within Psyr_0771at 875.790 kb on - strand, within Psyr_0771

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Oxedrine 10 mM
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873,439 + Psyr_0767 0.51 -0.4
873,439 + Psyr_0767 0.51 +0.6
873,753 + Psyr_0767 0.85 +0.5
873,753 + Psyr_0767 0.85 -0.2
873,753 + Psyr_0767 0.85 -0.6
873,754 - Psyr_0767 0.85 +0.4
873,754 - Psyr_0767 0.85 +0.6
873,779 + Psyr_0767 0.88 -0.1
873,779 + Psyr_0767 0.88 -0.2
873,779 + Psyr_0767 0.88 -0.2
873,779 + Psyr_0767 0.88 -1.8
873,779 + Psyr_0767 0.88 +0.1
873,779 + Psyr_0767 0.88 -0.1
873,779 + Psyr_0767 0.88 -0.1
873,779 + Psyr_0767 0.88 -0.4
873,779 + Psyr_0767 0.88 -0.2
873,779 + Psyr_0767 0.88 -0.1
873,779 + Psyr_0767 0.88 +0.4
873,780 - Psyr_0767 0.88 -0.7
873,780 - Psyr_0767 0.88 -0.8
873,780 - Psyr_0767 0.88 -0.1
873,780 - Psyr_0767 0.88 +0.2
873,780 - Psyr_0767 0.88 -0.2
874,075 + +1.0
874,076 - -1.1
874,165 + Psyr_0768 0.67 +0.8
874,166 - Psyr_0768 0.67 +1.4
874,214 + +0.7
874,214 + -0.1
874,215 - +0.5
874,431 - +0.1
874,439 + -0.6
874,771 + Psyr_0769 0.80 +0.1
874,771 + Psyr_0769 0.80 -0.6
874,772 - Psyr_0769 0.80 +0.1
874,830 + +1.0
874,861 + -0.4
874,861 + +2.4
874,877 + -0.6
874,883 + -1.0
874,887 + +0.2
874,888 - -0.2
874,888 - +0.2
874,888 - -0.2
874,923 + Psyr_0770 0.10 +0.4
874,923 + Psyr_0770 0.10 -1.5
874,924 - Psyr_0770 0.10 -1.5
874,924 - Psyr_0770 0.10 -1.3
874,924 - Psyr_0770 0.10 -2.4
874,973 + Psyr_0770 0.21 +0.2
874,973 + Psyr_0770 0.21 -1.3
874,974 - Psyr_0770 0.21 -1.2
874,984 + Psyr_0770 0.24 -0.1
875,149 - Psyr_0770 0.59 +0.4
875,183 + Psyr_0770 0.67 +0.2
875,183 + Psyr_0770 0.67 -0.0
875,183 + Psyr_0770 0.67 +0.6
875,183 + Psyr_0770 0.67 -2.8
875,183 + Psyr_0770 0.67 -0.8
875,269 + Psyr_0770 0.86 -0.0
875,275 + Psyr_0770 0.87 +0.1
875,275 + Psyr_0770 0.87 -0.3
875,275 + Psyr_0770 0.87 -0.2
875,275 + Psyr_0770 0.87 -1.4
875,276 - Psyr_0770 0.87 -0.4
875,276 - Psyr_0770 0.87 +1.6
875,276 - Psyr_0770 0.87 +1.1
875,276 - Psyr_0770 0.87 +0.4
875,276 - Psyr_0770 0.87 +0.3
875,334 + -0.2
875,335 - +0.8
875,395 + -1.3
875,432 + +0.2
875,441 + +0.1
875,441 + +1.7
875,442 - -0.0
875,442 - +1.5
875,442 - +1.4
875,442 - +0.4
875,478 + +0.2
875,478 + -2.7
875,478 + -0.4
875,478 + +1.7
875,478 + -1.6
875,479 - +0.5
875,495 + -0.4
875,495 + -0.9
875,571 + -0.6
875,571 + +0.3
875,571 + -0.5
875,590 + -0.3
875,591 - -0.9
875,591 - +0.5
875,591 - +0.6
875,591 - -0.5
875,591 - -0.2
875,651 + +0.3
875,652 - +0.8
875,652 - -0.1
875,652 - +0.9
875,690 + +0.0
875,690 + +0.6
875,691 - +0.5
875,785 - Psyr_0771 0.16 -0.7
875,789 + Psyr_0771 0.17 +0.5
875,789 + Psyr_0771 0.17 +0.1
875,789 + Psyr_0771 0.17 -1.3
875,790 - Psyr_0771 0.17 +0.5

Or see this region's nucleotide sequence