Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF811 and GFF812 overlap by 1 nucleotides GFF812 and GFF813 are separated by 126 nucleotides GFF813 and GFF814 are separated by 131 nucleotides
GFF811 - Phage tail length tape-measure protein 1, at 155,689 to 158,850
GFF811
GFF812 - Phage minor tail protein, at 158,850 to 159,179
GFF812
GFF813 - Attachment invasion locus protein precursor, at 159,306 to 159,824
GFF813
GFF814 - Phage minor tail protein, at 159,956 to 160,651
GFF814
Position (kb) 158
159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 158.058 kb on - strand, within GFF811 at 158.122 kb on + strand, within GFF811 at 158.388 kb on + strand, within GFF811 at 158.509 kb on + strand, within GFF811 at 158.628 kb on + strand at 158.701 kb on + strand at 158.701 kb on + strand at 158.882 kb on + strand at 158.963 kb on + strand, within GFF812 at 158.979 kb on + strand, within GFF812 at 158.993 kb on - strand, within GFF812 at 159.078 kb on + strand, within GFF812 at 159.194 kb on - strand at 159.287 kb on - strand at 159.334 kb on + strand at 159.380 kb on + strand, within GFF813 at 159.386 kb on - strand, within GFF813 at 159.404 kb on + strand, within GFF813 at 159.532 kb on - strand, within GFF813 at 159.616 kb on - strand, within GFF813 at 159.619 kb on + strand, within GFF813 at 159.620 kb on - strand, within GFF813 at 159.662 kb on + strand, within GFF813 at 159.662 kb on + strand, within GFF813 at 159.725 kb on + strand, within GFF813 at 159.744 kb on + strand, within GFF813 at 159.750 kb on + strand, within GFF813 at 159.750 kb on + strand, within GFF813 at 159.750 kb on + strand, within GFF813 at 159.751 kb on - strand, within GFF813 at 159.863 kb on + strand at 159.907 kb on + strand at 159.925 kb on - strand at 160.061 kb on + strand, within GFF814 at 160.061 kb on + strand, within GFF814 at 160.065 kb on - strand, within GFF814 at 160.117 kb on + strand, within GFF814 at 160.117 kb on + strand, within GFF814 at 160.117 kb on + strand, within GFF814 at 160.118 kb on - strand, within GFF814
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 158,058 - GFF811 0.75 -1.5 158,122 + GFF811 0.77 -2.4 158,388 + GFF811 0.85 -0.5 158,509 + GFF811 0.89 -0.6 158,628 + -0.5 158,701 + -1.0 158,701 + -0.8 158,882 + -1.1 158,963 + GFF812 0.34 -0.0 158,979 + GFF812 0.39 -1.1 158,993 - GFF812 0.43 -2.8 159,078 + GFF812 0.69 -0.3 159,194 - -0.2 159,287 - +0.3 159,334 + -1.0 159,380 + GFF813 0.14 -0.9 159,386 - GFF813 0.15 -0.5 159,404 + GFF813 0.19 +0.2 159,532 - GFF813 0.44 -0.9 159,616 - GFF813 0.60 -0.4 159,619 + GFF813 0.60 +0.5 159,620 - GFF813 0.61 -0.4 159,662 + GFF813 0.69 -0.6 159,662 + GFF813 0.69 -0.8 159,725 + GFF813 0.81 -1.3 159,744 + GFF813 0.84 -0.7 159,750 + GFF813 0.86 -0.9 159,750 + GFF813 0.86 -0.8 159,750 + GFF813 0.86 -0.7 159,751 - GFF813 0.86 -0.5 159,863 + -0.5 159,907 + -0.7 159,925 - -0.3 160,061 + GFF814 0.15 +0.1 160,061 + GFF814 0.15 -0.7 160,065 - GFF814 0.16 -0.5 160,117 + GFF814 0.23 -0.2 160,117 + GFF814 0.23 +0.3 160,117 + GFF814 0.23 -0.4 160,118 - GFF814 0.23 -0.2
Or see this region's nucleotide sequence