Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF762

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
118,593	-		GFF760	0.84	+0.6
118,668	-				-0.3
118,670	+				-0.0
118,670	+				-0.2
118,671	-				+0.3
118,671	-				-0.2
118,687	+				-0.2
118,688	-				+0.4
118,710	-				+0.1
118,747	+				+0.1
118,748	-				-0.1
118,802	-				+0.3
118,895	+		GFF761	0.18	-0.3
119,230	-		GFF761	0.58	-0.0
119,671	+		GFF762	0.18	+0.5
119,792	-		GFF762	0.39	+0.4
119,915	+		GFF762	0.61	+0.1
119,916	-		GFF762	0.61	+0.2
119,935	-		GFF762	0.65	+0.2
119,951	+		GFF762	0.67	+0.5
120,076	+		GFF762	0.90	-0.1
120,132	+				-1.2
120,139	+				+0.2
120,140	-				-0.1
120,176	+				+1.5
120,176	+				-1.0
120,177	-				+0.6
120,271	+				-0.5
120,372	-		GFF763	0.17	-0.3
120,513	+		GFF763	0.30	+0.2
120,514	-		GFF763	0.30	+0.6
120,514	-		GFF763	0.30	+0.1
120,516	-		GFF763	0.30	-1.8
120,590	-		GFF763	0.37	+0.1
120,689	+		GFF763	0.45	-0.7
120,704	+		GFF763	0.47	-0.0
120,821	+		GFF763	0.57	-0.2
120,838	+		GFF763	0.58	+0.2
120,839	-		GFF763	0.59	+0.0
121,093	+		GFF763	0.81	+0.4