Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF739

Experiment: Acanthamoeba sp., muxed culture-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF738 and GFF739 are separated by 646 nucleotidesGFF739 and GFF740 are separated by 5 nucleotides GFF738 - Probable acyl-CoA dehydrogenase (EC 1.3.99.3), at 95,784 to 96,947 GFF738 GFF739 - Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1), at 97,594 to 99,081 GFF739 GFF740 - Putative LysR family transcriptional regulator, at 99,087 to 99,977 GFF740 Position (kb) 97 98 99 100Strain fitness (log2 ratio) -1 0 1at 96.645 kb on - strand, within GFF738at 96.866 kb on - strandat 97.456 kb on - strandat 97.869 kb on + strand, within GFF739at 98.291 kb on - strand, within GFF739at 98.310 kb on + strand, within GFF739at 98.524 kb on + strand, within GFF739at 99.079 kb on + strandat 99.407 kb on - strand, within GFF740at 99.677 kb on + strand, within GFF740at 99.779 kb on + strand, within GFF740at 99.821 kb on + strand, within GFF740at 99.965 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
remove
96,645 - GFF738 0.74 +0.2
96,866 - -0.5
97,456 - -0.9
97,869 + GFF739 0.18 +0.2
98,291 - GFF739 0.47 +0.4
98,310 + GFF739 0.48 +0.5
98,524 + GFF739 0.62 +1.0
99,079 + +0.8
99,407 - GFF740 0.36 -0.3
99,677 + GFF740 0.66 +0.2
99,779 + GFF740 0.78 +0.2
99,821 + GFF740 0.82 +0.5
99,965 + -0.8

Or see this region's nucleotide sequence