Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF697 and GFF698 are separated by 29 nucleotides GFF698 and GFF699 are separated by 155 nucleotides GFF699 and GFF700 overlap by 32 nucleotides GFF700 and GFF701 are separated by 202 nucleotides
GFF697 - ATP-dependent helicase DinG/Rad3, at 54,222 to 56,366
GFF697
GFF698 - Anthranilate phosphoribosyltransferase like (EC 2.4.2.18), at 56,396 to 57,370
GFF698
GFF699 - probable exported protein YPO2521, at 57,526 to 57,786
GFF699
GFF700 - hypothetical protein, at 57,755 to 57,868
GFF700
GFF701 - Hypothetical Zinc-finger containing protein, at 58,071 to 58,337
GFF701
Position (kb) 56
57
58 Strain fitness (log2 ratio) -1
0
1 at 55.586 kb on + strand, within GFF697 at 55.697 kb on + strand, within GFF697 at 55.772 kb on + strand, within GFF697 at 55.829 kb on + strand, within GFF697 at 56.022 kb on - strand, within GFF697 at 56.321 kb on + strand at 56.322 kb on - strand at 56.480 kb on + strand at 56.480 kb on + strand at 56.528 kb on - strand, within GFF698 at 56.528 kb on - strand, within GFF698 at 56.528 kb on - strand, within GFF698 at 56.529 kb on + strand, within GFF698 at 56.529 kb on + strand, within GFF698 at 56.530 kb on - strand, within GFF698 at 56.582 kb on + strand, within GFF698 at 56.602 kb on + strand, within GFF698 at 56.734 kb on - strand, within GFF698 at 56.812 kb on - strand, within GFF698 at 56.812 kb on - strand, within GFF698 at 56.991 kb on + strand, within GFF698 at 57.150 kb on + strand, within GFF698 at 57.176 kb on + strand, within GFF698 at 57.327 kb on + strand at 57.327 kb on + strand at 57.401 kb on + strand at 57.527 kb on + strand at 57.587 kb on + strand, within GFF699 at 57.588 kb on - strand, within GFF699 at 57.771 kb on - strand at 58.047 kb on - strand at 58.156 kb on - strand, within GFF701 at 58.355 kb on - strand at 58.359 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 55,586 + GFF697 0.64 -0.2 55,697 + GFF697 0.69 +0.6 55,772 + GFF697 0.72 +0.1 55,829 + GFF697 0.75 +0.0 56,022 - GFF697 0.84 +0.6 56,321 + +0.3 56,322 - +0.8 56,480 + +0.0 56,480 + +0.1 56,528 - GFF698 0.14 +0.1 56,528 - GFF698 0.14 -0.1 56,528 - GFF698 0.14 +0.6 56,529 + GFF698 0.14 +0.2 56,529 + GFF698 0.14 +0.4 56,530 - GFF698 0.14 +0.3 56,582 + GFF698 0.19 +0.5 56,602 + GFF698 0.21 +0.1 56,734 - GFF698 0.35 +0.1 56,812 - GFF698 0.43 -0.4 56,812 - GFF698 0.43 -0.1 56,991 + GFF698 0.61 +1.4 57,150 + GFF698 0.77 +0.1 57,176 + GFF698 0.80 +0.0 57,327 + +0.2 57,327 + +0.3 57,401 + +0.3 57,527 + -0.3 57,587 + GFF699 0.23 -0.2 57,588 - GFF699 0.24 +0.3 57,771 - -0.5 58,047 - +0.4 58,156 - GFF701 0.32 +0.5 58,355 - -0.5 58,359 + -0.3
Or see this region's nucleotide sequence