Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF671

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF670 and GFF671 are separated by 86 nucleotidesGFF671 and GFF672 overlap by 4 nucleotides GFF670 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62), at 25,858 to 27,147 GFF670 GFF671 - Biotin synthase (EC 2.8.1.6), at 27,234 to 28,274 GFF671 GFF672 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 28,271 to 29,428 GFF672 Position (kb) 27 28 29Strain fitness (log2 ratio) -2 -1 0 1at 26.235 kb on + strand, within GFF670at 26.236 kb on - strand, within GFF670at 26.408 kb on - strand, within GFF670at 26.451 kb on + strand, within GFF670at 26.452 kb on - strand, within GFF670at 26.452 kb on - strand, within GFF670at 26.458 kb on - strand, within GFF670at 26.480 kb on + strand, within GFF670at 26.480 kb on + strand, within GFF670at 26.482 kb on + strand, within GFF670at 26.482 kb on + strand, within GFF670at 26.482 kb on + strand, within GFF670at 26.483 kb on - strand, within GFF670at 26.483 kb on - strand, within GFF670at 26.483 kb on - strand, within GFF670at 26.483 kb on - strand, within GFF670at 26.869 kb on - strand, within GFF670at 26.971 kb on - strand, within GFF670at 26.971 kb on - strand, within GFF670at 26.973 kb on - strand, within GFF670at 27.069 kb on - strandat 27.099 kb on - strandat 27.217 kb on + strandat 27.353 kb on - strand, within GFF671at 27.362 kb on + strand, within GFF671at 27.363 kb on - strand, within GFF671at 27.404 kb on + strand, within GFF671at 27.405 kb on - strand, within GFF671at 27.467 kb on - strand, within GFF671at 27.476 kb on - strand, within GFF671at 27.681 kb on + strand, within GFF671at 27.681 kb on + strand, within GFF671at 27.723 kb on - strand, within GFF671at 27.738 kb on - strand, within GFF671at 27.741 kb on + strand, within GFF671at 27.741 kb on + strand, within GFF671at 27.742 kb on - strand, within GFF671at 27.788 kb on + strand, within GFF671at 27.789 kb on - strand, within GFF671at 27.789 kb on - strand, within GFF671at 28.005 kb on + strand, within GFF671at 28.005 kb on + strand, within GFF671at 28.151 kb on + strand, within GFF671at 28.254 kb on + strandat 28.255 kb on - strandat 28.324 kb on + strandat 28.341 kb on - strandat 28.341 kb on - strandat 28.391 kb on + strand, within GFF672at 28.391 kb on + strand, within GFF672at 28.392 kb on - strand, within GFF672at 28.397 kb on - strand, within GFF672at 28.425 kb on + strand, within GFF672at 28.585 kb on + strand, within GFF672at 28.802 kb on + strand, within GFF672at 28.802 kb on + strand, within GFF672at 28.802 kb on + strand, within GFF672at 28.802 kb on + strand, within GFF672at 28.803 kb on - strand, within GFF672at 28.803 kb on - strand, within GFF672at 28.803 kb on - strand, within GFF672

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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26,235 + GFF670 0.29 -0.2
26,236 - GFF670 0.29 +0.7
26,408 - GFF670 0.43 +0.0
26,451 + GFF670 0.46 +0.0
26,452 - GFF670 0.46 -0.1
26,452 - GFF670 0.46 +0.4
26,458 - GFF670 0.47 +0.0
26,480 + GFF670 0.48 +0.0
26,480 + GFF670 0.48 +0.3
26,482 + GFF670 0.48 +0.1
26,482 + GFF670 0.48 +0.2
26,482 + GFF670 0.48 -0.1
26,483 - GFF670 0.48 +0.0
26,483 - GFF670 0.48 +0.2
26,483 - GFF670 0.48 +0.5
26,483 - GFF670 0.48 -0.2
26,869 - GFF670 0.78 +0.4
26,971 - GFF670 0.86 +0.2
26,971 - GFF670 0.86 +0.2
26,973 - GFF670 0.86 -0.8
27,069 - -0.9
27,099 - +0.1
27,217 + -0.5
27,353 - GFF671 0.11 +1.0
27,362 + GFF671 0.12 +0.4
27,363 - GFF671 0.12 -0.0
27,404 + GFF671 0.16 +0.6
27,405 - GFF671 0.16 +0.2
27,467 - GFF671 0.22 +1.6
27,476 - GFF671 0.23 +0.5
27,681 + GFF671 0.43 -0.6
27,681 + GFF671 0.43 +0.3
27,723 - GFF671 0.47 -0.3
27,738 - GFF671 0.48 +0.2
27,741 + GFF671 0.49 +0.4
27,741 + GFF671 0.49 +0.5
27,742 - GFF671 0.49 -0.2
27,788 + GFF671 0.53 +0.4
27,789 - GFF671 0.53 -1.0
27,789 - GFF671 0.53 -0.3
28,005 + GFF671 0.74 -0.0
28,005 + GFF671 0.74 +0.1
28,151 + GFF671 0.88 -0.5
28,254 + +0.2
28,255 - +1.1
28,324 + -0.7
28,341 - +0.2
28,341 - -0.4
28,391 + GFF672 0.10 -0.2
28,391 + GFF672 0.10 +1.4
28,392 - GFF672 0.10 +0.4
28,397 - GFF672 0.11 +0.4
28,425 + GFF672 0.13 +0.3
28,585 + GFF672 0.27 -2.2
28,802 + GFF672 0.46 -0.7
28,802 + GFF672 0.46 -0.0
28,802 + GFF672 0.46 +1.2
28,802 + GFF672 0.46 -0.4
28,803 - GFF672 0.46 -0.6
28,803 - GFF672 0.46 -0.1
28,803 - GFF672 0.46 -0.1

Or see this region's nucleotide sequence