Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4860 and GFF4861 are separated by 1 nucleotides GFF4861 and GFF4862 are separated by 57 nucleotides GFF4862 and GFF4863 are separated by 58 nucleotides
GFF4860 - L-fuculokinase (EC 2.7.1.51), at 160,061 to 161,479
GFF4860
GFF4861 - L-fucose mutarotase, at 161,481 to 161,903
GFF4861
GFF4862 - L-fucose operon activator, at 161,961 to 162,671
GFF4862
GFF4863 - 'LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM' transl_table=11, at 162,730 to 163,830
GFF4863
Position (kb) 161
162
163 Strain fitness (log2 ratio) -2
-1
0
1
2 at 161.138 kb on - strand, within GFF4860 at 161.247 kb on + strand, within GFF4860 at 161.424 kb on - strand at 161.436 kb on - strand at 161.672 kb on + strand, within GFF4861 at 161.673 kb on - strand, within GFF4861 at 162.044 kb on + strand, within GFF4862 at 162.085 kb on + strand, within GFF4862 at 162.125 kb on + strand, within GFF4862 at 162.126 kb on - strand, within GFF4862 at 162.130 kb on - strand, within GFF4862 at 162.130 kb on - strand, within GFF4862 at 162.232 kb on + strand, within GFF4862 at 162.280 kb on - strand, within GFF4862 at 162.336 kb on - strand, within GFF4862 at 162.336 kb on - strand, within GFF4862 at 162.336 kb on - strand, within GFF4862 at 162.405 kb on + strand, within GFF4862 at 162.414 kb on + strand, within GFF4862 at 162.542 kb on + strand, within GFF4862 at 162.542 kb on + strand, within GFF4862 at 162.732 kb on - strand at 162.866 kb on + strand, within GFF4863 at 163.115 kb on - strand, within GFF4863 at 163.115 kb on - strand, within GFF4863 at 163.131 kb on + strand, within GFF4863 at 163.132 kb on - strand, within GFF4863 at 163.190 kb on + strand, within GFF4863 at 163.190 kb on + strand, within GFF4863 at 163.191 kb on - strand, within GFF4863 at 163.191 kb on - strand, within GFF4863 at 163.191 kb on - strand, within GFF4863 at 163.191 kb on - strand, within GFF4863 at 163.191 kb on - strand, within GFF4863 at 163.314 kb on + strand, within GFF4863 at 163.356 kb on - strand, within GFF4863 at 163.356 kb on - strand, within GFF4863 at 163.492 kb on - strand, within GFF4863
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 161,138 - GFF4860 0.76 +1.2 161,247 + GFF4860 0.84 -0.3 161,424 - +0.1 161,436 - +0.3 161,672 + GFF4861 0.45 -0.4 161,673 - GFF4861 0.45 -1.9 162,044 + GFF4862 0.12 +0.1 162,085 + GFF4862 0.17 +0.6 162,125 + GFF4862 0.23 +0.8 162,126 - GFF4862 0.23 -0.1 162,130 - GFF4862 0.24 -0.1 162,130 - GFF4862 0.24 -0.6 162,232 + GFF4862 0.38 +0.5 162,280 - GFF4862 0.45 +0.6 162,336 - GFF4862 0.53 -0.0 162,336 - GFF4862 0.53 +0.1 162,336 - GFF4862 0.53 +0.6 162,405 + GFF4862 0.62 +0.3 162,414 + GFF4862 0.64 +0.5 162,542 + GFF4862 0.82 -0.3 162,542 + GFF4862 0.82 +0.1 162,732 - -0.2 162,866 + GFF4863 0.12 -1.4 163,115 - GFF4863 0.35 +0.1 163,115 - GFF4863 0.35 -0.3 163,131 + GFF4863 0.36 +0.8 163,132 - GFF4863 0.37 +0.3 163,190 + GFF4863 0.42 +1.9 163,190 + GFF4863 0.42 -0.3 163,191 - GFF4863 0.42 +0.8 163,191 - GFF4863 0.42 -1.0 163,191 - GFF4863 0.42 -0.2 163,191 - GFF4863 0.42 +0.7 163,191 - GFF4863 0.42 +0.1 163,314 + GFF4863 0.53 -0.4 163,356 - GFF4863 0.57 -0.3 163,356 - GFF4863 0.57 +1.0 163,492 - GFF4863 0.69 -0.2
Or see this region's nucleotide sequence