Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4860

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4859 and GFF4860 are separated by 100 nucleotidesGFF4860 and GFF4861 are separated by 1 nucleotidesGFF4861 and GFF4862 are separated by 57 nucleotides GFF4859 - L-fucose isomerase (EC 5.3.1.25), at 158,185 to 159,960 GFF4859 GFF4860 - L-fuculokinase (EC 2.7.1.51), at 160,061 to 161,479 GFF4860 GFF4861 - L-fucose mutarotase, at 161,481 to 161,903 GFF4861 GFF4862 - L-fucose operon activator, at 161,961 to 162,671 GFF4862 Position (kb) 160 161 162Strain fitness (log2 ratio) -3 -2 -1 0 1at 159.145 kb on - strand, within GFF4859at 159.277 kb on + strand, within GFF4859at 159.345 kb on + strand, within GFF4859at 159.345 kb on + strand, within GFF4859at 159.357 kb on + strand, within GFF4859at 159.357 kb on + strand, within GFF4859at 159.390 kb on + strand, within GFF4859at 159.503 kb on - strand, within GFF4859at 159.676 kb on - strand, within GFF4859at 159.684 kb on + strand, within GFF4859at 159.684 kb on + strand, within GFF4859at 159.684 kb on + strand, within GFF4859at 159.688 kb on - strand, within GFF4859at 159.791 kb on + strandat 159.808 kb on - strandat 159.837 kb on - strandat 159.840 kb on + strandat 159.840 kb on + strandat 159.840 kb on + strandat 159.841 kb on - strandat 159.841 kb on - strandat 159.841 kb on - strandat 159.841 kb on - strandat 159.841 kb on - strandat 159.949 kb on + strandat 160.014 kb on - strandat 160.057 kb on - strandat 160.061 kb on - strandat 160.300 kb on + strand, within GFF4860at 160.300 kb on + strand, within GFF4860at 160.301 kb on - strand, within GFF4860at 160.411 kb on + strand, within GFF4860at 160.537 kb on + strand, within GFF4860at 160.592 kb on - strand, within GFF4860at 160.946 kb on + strand, within GFF4860at 160.946 kb on + strand, within GFF4860at 160.948 kb on + strand, within GFF4860at 160.948 kb on + strand, within GFF4860at 161.138 kb on - strand, within GFF4860at 161.247 kb on + strand, within GFF4860at 161.424 kb on - strandat 161.436 kb on - strandat 161.672 kb on + strand, within GFF4861at 161.673 kb on - strand, within GFF4861at 162.044 kb on + strand, within GFF4862at 162.085 kb on + strand, within GFF4862at 162.125 kb on + strand, within GFF4862at 162.126 kb on - strand, within GFF4862at 162.130 kb on - strand, within GFF4862at 162.130 kb on - strand, within GFF4862at 162.232 kb on + strand, within GFF4862at 162.280 kb on - strand, within GFF4862at 162.336 kb on - strand, within GFF4862at 162.336 kb on - strand, within GFF4862at 162.336 kb on - strand, within GFF4862at 162.405 kb on + strand, within GFF4862at 162.414 kb on + strand, within GFF4862

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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159,145 - GFF4859 0.54 +1.3
159,277 + GFF4859 0.61 +0.4
159,345 + GFF4859 0.65 +0.7
159,345 + GFF4859 0.65 +0.1
159,357 + GFF4859 0.66 +0.8
159,357 + GFF4859 0.66 +0.1
159,390 + GFF4859 0.68 -0.0
159,503 - GFF4859 0.74 +1.4
159,676 - GFF4859 0.84 +0.5
159,684 + GFF4859 0.84 +0.2
159,684 + GFF4859 0.84 -0.2
159,684 + GFF4859 0.84 +0.4
159,688 - GFF4859 0.85 +1.1
159,791 + +0.2
159,808 - +0.9
159,837 - -0.9
159,840 + +0.4
159,840 + -0.1
159,840 + +0.1
159,841 - -0.3
159,841 - -0.1
159,841 - -0.4
159,841 - -0.0
159,841 - -0.4
159,949 + -3.0
160,014 - +0.9
160,057 - +0.2
160,061 - -0.1
160,300 + GFF4860 0.17 +0.4
160,300 + GFF4860 0.17 +0.7
160,301 - GFF4860 0.17 +0.2
160,411 + GFF4860 0.25 +0.3
160,537 + GFF4860 0.34 -0.1
160,592 - GFF4860 0.37 +0.6
160,946 + GFF4860 0.62 -0.0
160,946 + GFF4860 0.62 +0.1
160,948 + GFF4860 0.63 -0.2
160,948 + GFF4860 0.63 -0.8
161,138 - GFF4860 0.76 +1.2
161,247 + GFF4860 0.84 -0.3
161,424 - +0.1
161,436 - +0.3
161,672 + GFF4861 0.45 -0.4
161,673 - GFF4861 0.45 -1.9
162,044 + GFF4862 0.12 +0.1
162,085 + GFF4862 0.17 +0.6
162,125 + GFF4862 0.23 +0.8
162,126 - GFF4862 0.23 -0.1
162,130 - GFF4862 0.24 -0.1
162,130 - GFF4862 0.24 -0.6
162,232 + GFF4862 0.38 +0.5
162,280 - GFF4862 0.45 +0.6
162,336 - GFF4862 0.53 -0.0
162,336 - GFF4862 0.53 +0.1
162,336 - GFF4862 0.53 +0.6
162,405 + GFF4862 0.62 +0.3
162,414 + GFF4862 0.64 +0.5

Or see this region's nucleotide sequence