Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4856 and GFF4857 are separated by 153 nucleotides GFF4857 and GFF4858 are separated by 233 nucleotides GFF4858 and GFF4859 are separated by 31 nucleotides
GFF4856 - L-fuculose phosphate aldolase (EC 4.1.2.17), at 155,635 to 156,282
GFF4856
GFF4857 - FIG01045182: hypothetical protein, at 156,436 to 156,603
GFF4857
GFF4858 - Fucose permease, at 156,837 to 158,153
GFF4858
GFF4859 - L-fucose isomerase (EC 5.3.1.25), at 158,185 to 159,960
GFF4859
Position (kb) 156
157
158
159 Strain fitness (log2 ratio) -1
0
1 at 155.946 kb on - strand, within GFF4856 at 155.946 kb on - strand, within GFF4856 at 156.007 kb on - strand, within GFF4856 at 156.781 kb on - strand at 156.907 kb on - strand at 156.907 kb on - strand at 157.437 kb on - strand, within GFF4858 at 157.470 kb on + strand, within GFF4858 at 157.495 kb on + strand, within GFF4858 at 157.496 kb on - strand, within GFF4858 at 157.498 kb on + strand, within GFF4858 at 157.499 kb on - strand, within GFF4858 at 157.645 kb on - strand, within GFF4858 at 157.645 kb on - strand, within GFF4858 at 157.880 kb on + strand, within GFF4858 at 157.976 kb on + strand, within GFF4858 at 157.977 kb on - strand, within GFF4858 at 157.980 kb on + strand, within GFF4858 at 157.980 kb on + strand, within GFF4858 at 158.458 kb on + strand, within GFF4859 at 158.515 kb on - strand, within GFF4859 at 158.543 kb on - strand, within GFF4859 at 158.629 kb on - strand, within GFF4859 at 158.767 kb on - strand, within GFF4859 at 158.930 kb on - strand, within GFF4859 at 158.992 kb on - strand, within GFF4859 at 159.038 kb on + strand, within GFF4859 at 159.059 kb on - strand, within GFF4859 at 159.145 kb on - strand, within GFF4859
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 155,946 - GFF4856 0.48 +0.3 155,946 - GFF4856 0.48 +0.5 156,007 - GFF4856 0.57 +0.3 156,781 - -0.4 156,907 - +0.4 156,907 - -0.4 157,437 - GFF4858 0.46 -0.5 157,470 + GFF4858 0.48 +0.3 157,495 + GFF4858 0.50 +0.2 157,496 - GFF4858 0.50 +0.2 157,498 + GFF4858 0.50 -1.4 157,499 - GFF4858 0.50 -0.7 157,645 - GFF4858 0.61 +0.8 157,645 - GFF4858 0.61 +0.2 157,880 + GFF4858 0.79 +0.9 157,976 + GFF4858 0.86 +1.0 157,977 - GFF4858 0.87 +1.0 157,980 + GFF4858 0.87 +0.7 157,980 + GFF4858 0.87 +0.1 158,458 + GFF4859 0.15 +0.1 158,515 - GFF4859 0.19 -0.8 158,543 - GFF4859 0.20 -0.5 158,629 - GFF4859 0.25 +0.8 158,767 - GFF4859 0.33 +0.9 158,930 - GFF4859 0.42 +0.7 158,992 - GFF4859 0.45 -0.1 159,038 + GFF4859 0.48 -0.0 159,059 - GFF4859 0.49 +0.3 159,145 - GFF4859 0.54 +1.3
Or see this region's nucleotide sequence