Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4781

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4779 and GFF4780 are separated by 4 nucleotidesGFF4780 and GFF4781 overlap by 4 nucleotidesGFF4781 and GFF4782 overlap by 7 nucleotides GFF4779 - Hydroxypyruvate isomerase (EC 5.3.1.22), at 87,815 to 88,591 GFF4779 GFF4780 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 88,596 to 89,234 GFF4780 GFF4781 - FIG00641944: hypothetical protein, at 89,231 to 90,493 GFF4781 GFF4782 - D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 90,487 to 91,410 GFF4782 Position (kb) 89 90 91Strain fitness (log2 ratio) -1 0 1at 88.436 kb on - strand, within GFF4779at 88.446 kb on - strand, within GFF4779at 88.541 kb on - strandat 88.629 kb on + strandat 88.695 kb on - strand, within GFF4780at 88.752 kb on + strand, within GFF4780at 88.820 kb on - strand, within GFF4780at 88.820 kb on - strand, within GFF4780at 88.944 kb on + strand, within GFF4780at 88.945 kb on - strand, within GFF4780at 88.945 kb on - strand, within GFF4780at 89.003 kb on + strand, within GFF4780at 89.511 kb on + strand, within GFF4781at 89.512 kb on - strand, within GFF4781at 90.111 kb on + strand, within GFF4781at 90.112 kb on - strand, within GFF4781at 90.112 kb on - strand, within GFF4781at 90.247 kb on - strand, within GFF4781at 90.255 kb on + strand, within GFF4781at 90.601 kb on - strand, within GFF4782at 90.601 kb on - strand, within GFF4782at 90.605 kb on - strand, within GFF4782at 90.708 kb on - strand, within GFF4782at 90.708 kb on - strand, within GFF4782at 90.782 kb on + strand, within GFF4782at 90.782 kb on + strand, within GFF4782at 90.782 kb on + strand, within GFF4782at 90.782 kb on + strand, within GFF4782at 90.783 kb on - strand, within GFF4782at 90.846 kb on + strand, within GFF4782at 91.440 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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88,436 - GFF4779 0.80 -0.5
88,446 - GFF4779 0.81 -0.8
88,541 - -0.4
88,629 + +0.4
88,695 - GFF4780 0.15 -0.6
88,752 + GFF4780 0.24 -0.6
88,820 - GFF4780 0.35 +0.1
88,820 - GFF4780 0.35 -0.6
88,944 + GFF4780 0.54 +0.4
88,945 - GFF4780 0.55 +0.8
88,945 - GFF4780 0.55 +0.1
89,003 + GFF4780 0.64 -0.6
89,511 + GFF4781 0.22 -0.5
89,512 - GFF4781 0.22 -0.5
90,111 + GFF4781 0.70 -0.4
90,112 - GFF4781 0.70 +0.2
90,112 - GFF4781 0.70 -0.4
90,247 - GFF4781 0.80 +0.1
90,255 + GFF4781 0.81 -0.3
90,601 - GFF4782 0.12 -0.6
90,601 - GFF4782 0.12 +0.1
90,605 - GFF4782 0.13 -0.3
90,708 - GFF4782 0.24 +0.2
90,708 - GFF4782 0.24 -0.4
90,782 + GFF4782 0.32 +0.5
90,782 + GFF4782 0.32 +0.1
90,782 + GFF4782 0.32 -0.0
90,782 + GFF4782 0.32 +0.0
90,783 - GFF4782 0.32 -0.5
90,846 + GFF4782 0.39 +0.0
91,440 - -0.4

Or see this region's nucleotide sequence