Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4700

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
9,880	-		GFF4698	0.69	+0.8
9,929	+		GFF4698	0.82	+0.3
10,104	-		GFF4699	0.13	-0.7
10,264	-		GFF4699	0.33	-0.9
10,428	-		GFF4699	0.54	-0.5
10,540	+		GFF4699	0.69	+0.4
10,645	-		GFF4699	0.82	+0.9
10,647	+		GFF4699	0.82	-0.3
10,647	+		GFF4699	0.82	+0.5
10,648	-		GFF4699	0.82	-0.2
10,648	-		GFF4699	0.82	-0.7
10,714	-				+1.1
10,859	+				+0.9
10,860	-				-0.5
10,961	+		GFF4700	0.28	+1.5
11,006	+		GFF4700	0.41	+0.0
11,323	+				+0.0
11,323	+				-0.9
11,323	+				-0.6
11,323	+				+0.3
11,380	-				-0.7
11,393	-				-0.7
11,396	+				-1.4
11,498	+		GFF4701	0.10	-0.3
11,574	-		GFF4701	0.20	-2.1
11,678	+		GFF4701	0.34	-0.6
11,678	+		GFF4701	0.34	-0.5
11,679	-		GFF4701	0.34	-0.4
11,727	+		GFF4701	0.40	-0.1
11,789	-		GFF4701	0.48	-0.7
12,196	+				-0.3
12,199	+				+0.3