Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4570 and GFF4571 overlap by 1 nucleotides GFF4571 and GFF4572 overlap by 1 nucleotides GFF4572 and GFF4573 are separated by 159 nucleotides
GFF4570 - Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4), at 356,824 to 357,549
GFF4570
GFF4571 - Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4), at 357,549 to 358,223
GFF4571
GFF4572 - Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4), at 358,223 to 358,963
GFF4572
GFF4573 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 359,123 to 360,031
GFF4573
Position (kb) 358
359 Strain fitness (log2 ratio) -2
-1
0
1 at 357.305 kb on - strand, within GFF4570 at 357.461 kb on - strand, within GFF4570 at 357.571 kb on + strand at 357.611 kb on - strand at 357.730 kb on - strand, within GFF4571 at 357.789 kb on - strand, within GFF4571 at 358.049 kb on - strand, within GFF4571 at 358.180 kb on + strand at 358.288 kb on + strand at 358.308 kb on + strand, within GFF4572 at 358.308 kb on + strand, within GFF4572 at 358.309 kb on - strand, within GFF4572 at 358.498 kb on - strand, within GFF4572 at 358.744 kb on + strand, within GFF4572 at 358.744 kb on + strand, within GFF4572 at 358.757 kb on + strand, within GFF4572 at 358.761 kb on + strand, within GFF4572 at 358.806 kb on - strand, within GFF4572 at 358.819 kb on + strand, within GFF4572 at 358.903 kb on - strand at 358.955 kb on + strand at 358.963 kb on + strand at 358.963 kb on + strand at 358.963 kb on + strand at 358.964 kb on - strand at 358.964 kb on - strand at 359.061 kb on + strand at 359.061 kb on + strand at 359.061 kb on + strand at 359.063 kb on + strand at 359.063 kb on + strand at 359.064 kb on - strand at 359.064 kb on - strand at 359.137 kb on + strand at 359.231 kb on - strand, within GFF4573 at 359.323 kb on + strand, within GFF4573 at 359.324 kb on - strand, within GFF4573 at 359.425 kb on + strand, within GFF4573 at 359.489 kb on - strand, within GFF4573 at 359.492 kb on - strand, within GFF4573 at 359.524 kb on + strand, within GFF4573 at 359.525 kb on - strand, within GFF4573 at 359.789 kb on - strand, within GFF4573 at 359.865 kb on + strand, within GFF4573
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 357,305 - GFF4570 0.66 -0.0 357,461 - GFF4570 0.88 -0.2 357,571 + -0.1 357,611 - -0.0 357,730 - GFF4571 0.27 -0.2 357,789 - GFF4571 0.36 -0.3 358,049 - GFF4571 0.74 +0.0 358,180 + +0.5 358,288 + +1.1 358,308 + GFF4572 0.11 +0.2 358,308 + GFF4572 0.11 -0.2 358,309 - GFF4572 0.12 +0.2 358,498 - GFF4572 0.37 -0.2 358,744 + GFF4572 0.70 +0.2 358,744 + GFF4572 0.70 +0.1 358,757 + GFF4572 0.72 +0.6 358,761 + GFF4572 0.73 -0.2 358,806 - GFF4572 0.79 +0.1 358,819 + GFF4572 0.80 +1.0 358,903 - +1.1 358,955 + +0.2 358,963 + -0.4 358,963 + +0.4 358,963 + -0.4 358,964 - +0.0 358,964 - -0.2 359,061 + +0.3 359,061 + -1.5 359,061 + -0.3 359,063 + -1.9 359,063 + -0.3 359,064 - -0.5 359,064 - +0.4 359,137 + +0.4 359,231 - GFF4573 0.12 +0.1 359,323 + GFF4573 0.22 +0.5 359,324 - GFF4573 0.22 +0.6 359,425 + GFF4573 0.33 -0.4 359,489 - GFF4573 0.40 -0.2 359,492 - GFF4573 0.41 -0.6 359,524 + GFF4573 0.44 +0.5 359,525 - GFF4573 0.44 +0.1 359,789 - GFF4573 0.73 -0.2 359,865 + GFF4573 0.82 -0.1
Or see this region's nucleotide sequence