Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4435 and GFF4436 are separated by 32 nucleotides GFF4436 and GFF4437 are separated by 3 nucleotides GFF4437 and GFF4438 are separated by 40 nucleotides
GFF4435 - FIG074102: hypothetical protein, at 223,248 to 224,507
GFF4435
GFF4436 - FIG074102: hypothetical protein, at 224,540 to 225,328
GFF4436
GFF4437 - Carbamate kinase (EC 2.7.2.2), at 225,332 to 226,225
GFF4437
GFF4438 - Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21), at 226,266 to 227,333
GFF4438
Position (kb) 224
225
226 Strain fitness (log2 ratio) -2
-1
0
1 at 223.560 kb on - strand, within GFF4435 at 223.560 kb on - strand, within GFF4435 at 223.723 kb on + strand, within GFF4435 at 223.724 kb on - strand, within GFF4435 at 224.030 kb on + strand, within GFF4435 at 224.402 kb on + strand at 224.527 kb on + strand at 224.608 kb on + strand at 224.634 kb on + strand, within GFF4436 at 224.853 kb on - strand, within GFF4436 at 224.917 kb on - strand, within GFF4436 at 225.176 kb on + strand, within GFF4436 at 225.346 kb on - strand at 225.369 kb on + strand at 225.415 kb on + strand at 225.415 kb on + strand at 225.415 kb on + strand at 225.471 kb on + strand, within GFF4437 at 225.475 kb on - strand, within GFF4437 at 225.475 kb on - strand, within GFF4437 at 225.589 kb on + strand, within GFF4437 at 225.589 kb on + strand, within GFF4437 at 225.713 kb on + strand, within GFF4437 at 225.749 kb on + strand, within GFF4437 at 225.779 kb on + strand, within GFF4437 at 225.931 kb on - strand, within GFF4437 at 226.013 kb on + strand, within GFF4437 at 226.014 kb on - strand, within GFF4437 at 226.267 kb on + strand at 226.271 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 223,560 - GFF4435 0.25 +0.3 223,560 - GFF4435 0.25 -0.2 223,723 + GFF4435 0.38 +0.1 223,724 - GFF4435 0.38 -0.0 224,030 + GFF4435 0.62 -0.2 224,402 + -0.1 224,527 + -0.3 224,608 + +0.1 224,634 + GFF4436 0.12 -0.1 224,853 - GFF4436 0.40 -1.4 224,917 - GFF4436 0.48 -1.6 225,176 + GFF4436 0.81 +0.1 225,346 - -1.8 225,369 + -0.1 225,415 + +0.0 225,415 + +0.1 225,415 + +0.2 225,471 + GFF4437 0.16 -0.1 225,475 - GFF4437 0.16 -0.9 225,475 - GFF4437 0.16 -0.1 225,589 + GFF4437 0.29 -0.4 225,589 + GFF4437 0.29 +0.5 225,713 + GFF4437 0.43 +0.1 225,749 + GFF4437 0.47 +0.1 225,779 + GFF4437 0.50 +0.2 225,931 - GFF4437 0.67 +0.3 226,013 + GFF4437 0.76 +0.1 226,014 - GFF4437 0.76 +0.3 226,267 + -0.4 226,271 + -0.3
Or see this region's nucleotide sequence