Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4305

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
90,225	+		GFF4304	0.43	+0.4
90,226	-		GFF4304	0.43	+0.3
90,589	+		GFF4304	0.77	-0.2
90,624	+		GFF4304	0.80	-2.3
90,633	+		GFF4304	0.81	-0.5
90,741	+				-0.2
90,743	+				-0.7
90,744	-				-0.3
90,744	-				-0.3
90,744	-				-1.1
90,754	+				-0.4
90,776	+				-0.5
90,804	+				+0.2
90,804	+				+0.1
90,805	-				+0.3
90,891	-				-0.7
90,967	+				-0.2
90,967	+				-0.5
91,031	+				-2.1
91,046	+				-0.8
91,119	+				-1.0
91,135	+				+0.8
91,136	-				+1.3
91,493	-		GFF4305	0.41	-0.2
91,498	-		GFF4305	0.41	-1.7
91,701	+		GFF4305	0.59	-0.8
91,815	+		GFF4305	0.69	+0.6
91,815	+		GFF4305	0.69	-1.6
91,905	+		GFF4305	0.77	+0.5
92,167	+				+0.2
92,475	+		GFF4306	0.88	+1.1