Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4122

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4121 and GFF4122 are separated by 278 nucleotides GFF4121 - Mobile element protein, at 209 to 508 GFF4121 GFF4122 - FIG01046577: hypothetical protein, at 787 to 2,769 GFF4122 Position (kb) 0 1 2 3Strain fitness (log2 ratio) -1 0 1at 0.206 kb on - strandat 0.206 kb on - strandat 0.383 kb on - strand, within GFF4121at 0.542 kb on + strandat 0.557 kb on + strandat 0.583 kb on + strandat 0.603 kb on + strandat 0.743 kb on + strandat 0.852 kb on - strandat 1.799 kb on + strand, within GFF4122at 3.527 kb on - strandat 3.531 kb on + strandat 3.578 kb on + strandat 3.662 kb on + strandat 3.694 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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206 - +0.0
206 - -0.6
383 - GFF4121 0.58 +0.4
542 + -0.7
557 + -0.4
583 + +0.1
603 + +0.5
743 + +0.1
852 - +0.0
1,799 + GFF4122 0.51 +0.5
3,527 - -0.9
3,531 + -0.4
3,578 + -0.7
3,662 + -0.6
3,694 + -0.0

Or see this region's nucleotide sequence