Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4074

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4072 and GFF4073 are separated by 23 nucleotidesGFF4073 and GFF4074 are separated by 18 nucleotidesGFF4074 and GFF4075 overlap by 7 nucleotidesGFF4075 and GFF4076 are separated by 192 nucleotides GFF4072 - VgrG protein, at 35,283 to 37,472 GFF4072 GFF4073 - FIG074102: hypothetical protein, at 37,496 to 37,942 GFF4073 GFF4074 - ClpB protein, at 37,961 to 42,055 GFF4074 GFF4075 - FIG01047741: hypothetical protein, at 42,049 to 42,312 GFF4075 GFF4076 - ClpB protein, at 42,505 to 43,245 GFF4076 Position (kb) 37 38 39 40 41 42 43Strain fitness (log2 ratio) -2 -1 0 1 2at 37.009 kb on - strand, within GFF4072at 37.318 kb on + strandat 37.318 kb on + strandat 37.363 kb on + strandat 37.363 kb on + strandat 37.508 kb on + strandat 37.613 kb on - strand, within GFF4073at 37.655 kb on + strand, within GFF4073at 37.655 kb on + strand, within GFF4073at 37.802 kb on + strand, within GFF4073at 37.965 kb on - strandat 37.994 kb on + strandat 38.472 kb on + strand, within GFF4074at 38.473 kb on - strand, within GFF4074at 38.555 kb on - strand, within GFF4074at 38.901 kb on + strand, within GFF4074at 38.902 kb on - strand, within GFF4074at 38.903 kb on + strand, within GFF4074at 38.930 kb on + strand, within GFF4074at 38.930 kb on + strand, within GFF4074at 38.943 kb on - strand, within GFF4074at 38.957 kb on + strand, within GFF4074at 38.996 kb on + strand, within GFF4074at 38.997 kb on - strand, within GFF4074at 39.182 kb on + strand, within GFF4074at 39.386 kb on + strand, within GFF4074at 39.449 kb on + strand, within GFF4074at 39.450 kb on - strand, within GFF4074at 39.464 kb on + strand, within GFF4074at 39.465 kb on - strand, within GFF4074at 39.465 kb on - strand, within GFF4074at 39.466 kb on + strand, within GFF4074at 39.512 kb on + strand, within GFF4074at 39.576 kb on - strand, within GFF4074at 39.761 kb on + strand, within GFF4074at 39.887 kb on + strand, within GFF4074at 39.888 kb on - strand, within GFF4074at 39.888 kb on - strand, within GFF4074at 39.945 kb on + strand, within GFF4074at 39.956 kb on + strand, within GFF4074at 39.957 kb on - strand, within GFF4074at 40.014 kb on - strand, within GFF4074at 40.014 kb on - strand, within GFF4074at 40.016 kb on - strand, within GFF4074at 40.016 kb on - strand, within GFF4074at 40.016 kb on - strand, within GFF4074at 40.016 kb on - strand, within GFF4074at 40.016 kb on - strand, within GFF4074at 40.085 kb on - strand, within GFF4074at 40.261 kb on + strand, within GFF4074at 40.287 kb on - strand, within GFF4074at 40.406 kb on + strand, within GFF4074at 40.551 kb on + strand, within GFF4074at 40.551 kb on + strand, within GFF4074at 40.551 kb on + strand, within GFF4074at 40.551 kb on + strand, within GFF4074at 40.551 kb on + strand, within GFF4074at 40.551 kb on + strand, within GFF4074at 40.551 kb on + strand, within GFF4074at 40.551 kb on + strand, within GFF4074at 40.551 kb on + strand, within GFF4074at 40.552 kb on - strand, within GFF4074at 40.552 kb on - strand, within GFF4074at 40.552 kb on - strand, within GFF4074at 40.552 kb on - strand, within GFF4074at 40.552 kb on - strand, within GFF4074at 40.552 kb on - strand, within GFF4074at 40.552 kb on - strand, within GFF4074at 40.552 kb on - strand, within GFF4074at 40.552 kb on - strand, within GFF4074at 40.628 kb on + strand, within GFF4074at 40.711 kb on - strand, within GFF4074at 40.739 kb on + strand, within GFF4074at 40.856 kb on + strand, within GFF4074at 40.856 kb on + strand, within GFF4074at 40.920 kb on - strand, within GFF4074at 40.920 kb on - strand, within GFF4074at 40.926 kb on - strand, within GFF4074at 40.967 kb on + strand, within GFF4074at 40.985 kb on + strand, within GFF4074at 41.080 kb on + strand, within GFF4074at 41.471 kb on + strand, within GFF4074at 41.693 kb on + strandat 41.694 kb on - strandat 41.826 kb on + strandat 41.860 kb on + strandat 41.861 kb on - strandat 41.861 kb on - strandat 41.865 kb on - strandat 41.865 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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37,009 - GFF4072 0.79 +0.2
37,318 + -0.5
37,318 + -0.2
37,363 + -0.4
37,363 + +0.5
37,508 + -0.5
37,613 - GFF4073 0.26 -0.2
37,655 + GFF4073 0.36 +0.7
37,655 + GFF4073 0.36 -0.0
37,802 + GFF4073 0.68 -0.3
37,965 - +0.0
37,994 + -0.0
38,472 + GFF4074 0.12 +0.5
38,473 - GFF4074 0.13 -0.8
38,555 - GFF4074 0.15 -0.1
38,901 + GFF4074 0.23 -0.1
38,902 - GFF4074 0.23 +0.4
38,903 + GFF4074 0.23 -0.4
38,930 + GFF4074 0.24 +0.0
38,930 + GFF4074 0.24 +0.1
38,943 - GFF4074 0.24 -1.8
38,957 + GFF4074 0.24 +0.4
38,996 + GFF4074 0.25 +0.4
38,997 - GFF4074 0.25 -0.5
39,182 + GFF4074 0.30 +0.0
39,386 + GFF4074 0.35 -0.2
39,449 + GFF4074 0.36 -0.4
39,450 - GFF4074 0.36 +0.9
39,464 + GFF4074 0.37 -0.2
39,465 - GFF4074 0.37 +0.1
39,465 - GFF4074 0.37 +0.9
39,466 + GFF4074 0.37 +0.4
39,512 + GFF4074 0.38 +0.4
39,576 - GFF4074 0.39 -0.4
39,761 + GFF4074 0.44 -0.2
39,887 + GFF4074 0.47 +0.1
39,888 - GFF4074 0.47 -1.1
39,888 - GFF4074 0.47 +1.6
39,945 + GFF4074 0.48 +0.0
39,956 + GFF4074 0.49 +0.6
39,957 - GFF4074 0.49 +0.3
40,014 - GFF4074 0.50 +0.8
40,014 - GFF4074 0.50 -0.6
40,016 - GFF4074 0.50 +0.1
40,016 - GFF4074 0.50 +0.2
40,016 - GFF4074 0.50 +0.3
40,016 - GFF4074 0.50 +0.1
40,016 - GFF4074 0.50 -1.6
40,085 - GFF4074 0.52 -0.2
40,261 + GFF4074 0.56 -0.1
40,287 - GFF4074 0.57 -0.1
40,406 + GFF4074 0.60 +0.5
40,551 + GFF4074 0.63 +0.6
40,551 + GFF4074 0.63 +0.0
40,551 + GFF4074 0.63 -0.1
40,551 + GFF4074 0.63 +2.1
40,551 + GFF4074 0.63 +0.1
40,551 + GFF4074 0.63 +0.6
40,551 + GFF4074 0.63 -2.3
40,551 + GFF4074 0.63 -0.1
40,551 + GFF4074 0.63 +0.2
40,552 - GFF4074 0.63 -0.5
40,552 - GFF4074 0.63 -1.0
40,552 - GFF4074 0.63 -0.1
40,552 - GFF4074 0.63 +0.8
40,552 - GFF4074 0.63 -0.3
40,552 - GFF4074 0.63 -0.4
40,552 - GFF4074 0.63 -0.3
40,552 - GFF4074 0.63 -0.4
40,552 - GFF4074 0.63 +0.5
40,628 + GFF4074 0.65 +0.4
40,711 - GFF4074 0.67 -0.2
40,739 + GFF4074 0.68 -1.4
40,856 + GFF4074 0.71 +0.5
40,856 + GFF4074 0.71 +0.3
40,920 - GFF4074 0.72 +1.0
40,920 - GFF4074 0.72 -1.2
40,926 - GFF4074 0.72 +0.1
40,967 + GFF4074 0.73 +0.6
40,985 + GFF4074 0.74 +0.2
41,080 + GFF4074 0.76 +0.8
41,471 + GFF4074 0.86 +0.0
41,693 + -0.1
41,694 - -0.3
41,826 + +0.0
41,860 + -0.1
41,861 - -0.1
41,861 - -0.1
41,865 - -0.6
41,865 - +0.3

Or see this region's nucleotide sequence