Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4073

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4072 and GFF4073 are separated by 23 nucleotidesGFF4073 and GFF4074 are separated by 18 nucleotides GFF4072 - VgrG protein, at 35,283 to 37,472 GFF4072 GFF4073 - FIG074102: hypothetical protein, at 37,496 to 37,942 GFF4073 GFF4074 - ClpB protein, at 37,961 to 42,055 GFF4074 Position (kb) 37 38Strain fitness (log2 ratio) -2 -1 0 1at 36.599 kb on + strand, within GFF4072at 36.599 kb on + strand, within GFF4072at 36.739 kb on - strand, within GFF4072at 36.929 kb on + strand, within GFF4072at 36.933 kb on + strand, within GFF4072at 36.933 kb on + strand, within GFF4072at 36.933 kb on + strand, within GFF4072at 37.009 kb on - strand, within GFF4072at 37.318 kb on + strandat 37.318 kb on + strandat 37.363 kb on + strandat 37.363 kb on + strandat 37.508 kb on + strandat 37.613 kb on - strand, within GFF4073at 37.655 kb on + strand, within GFF4073at 37.655 kb on + strand, within GFF4073at 37.802 kb on + strand, within GFF4073at 37.965 kb on - strandat 37.994 kb on + strandat 38.472 kb on + strand, within GFF4074at 38.473 kb on - strand, within GFF4074at 38.555 kb on - strand, within GFF4074at 38.901 kb on + strand, within GFF4074at 38.902 kb on - strand, within GFF4074at 38.903 kb on + strand, within GFF4074at 38.930 kb on + strand, within GFF4074at 38.930 kb on + strand, within GFF4074

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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36,599 + GFF4072 0.60 +0.1
36,599 + GFF4072 0.60 -0.5
36,739 - GFF4072 0.66 -1.8
36,929 + GFF4072 0.75 +1.1
36,933 + GFF4072 0.75 +0.1
36,933 + GFF4072 0.75 -0.1
36,933 + GFF4072 0.75 +0.7
37,009 - GFF4072 0.79 +0.2
37,318 + -0.5
37,318 + -0.2
37,363 + -0.4
37,363 + +0.5
37,508 + -0.5
37,613 - GFF4073 0.26 -0.2
37,655 + GFF4073 0.36 +0.7
37,655 + GFF4073 0.36 -0.0
37,802 + GFF4073 0.68 -0.3
37,965 - +0.0
37,994 + -0.0
38,472 + GFF4074 0.12 +0.5
38,473 - GFF4074 0.13 -0.8
38,555 - GFF4074 0.15 -0.1
38,901 + GFF4074 0.23 -0.1
38,902 - GFF4074 0.23 +0.4
38,903 + GFF4074 0.23 -0.4
38,930 + GFF4074 0.24 +0.0
38,930 + GFF4074 0.24 +0.1

Or see this region's nucleotide sequence