Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4024

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4023 and GFF4024 are separated by 185 nucleotidesGFF4024 and GFF4025 are separated by 39 nucleotides GFF4023 - Putative transport system permease protein, at 289,846 to 291,051 GFF4023 GFF4024 - FIG00640199: hypothetical protein, at 291,237 to 291,662 GFF4024 GFF4025 - Cytoplasmic alpha-amylase (EC 3.2.1.1), at 291,702 to 293,186 GFF4025 Position (kb) 291 292Strain fitness (log2 ratio) -1 0 1at 290.270 kb on + strand, within GFF4023at 290.326 kb on - strand, within GFF4023at 290.614 kb on + strand, within GFF4023at 290.750 kb on - strand, within GFF4023at 290.855 kb on + strand, within GFF4023at 290.856 kb on - strand, within GFF4023at 290.960 kb on + strandat 291.123 kb on - strandat 291.123 kb on - strandat 291.129 kb on - strandat 291.496 kb on + strand, within GFF4024at 291.525 kb on + strand, within GFF4024at 291.830 kb on - strandat 291.935 kb on + strand, within GFF4025at 291.960 kb on + strand, within GFF4025at 291.961 kb on - strand, within GFF4025at 292.191 kb on - strand, within GFF4025at 292.270 kb on + strand, within GFF4025at 292.358 kb on - strand, within GFF4025at 292.432 kb on - strand, within GFF4025at 292.452 kb on - strand, within GFF4025at 292.535 kb on - strand, within GFF4025at 292.602 kb on - strand, within GFF4025at 292.646 kb on - strand, within GFF4025

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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290,270 + GFF4023 0.35 -1.3
290,326 - GFF4023 0.40 +0.2
290,614 + GFF4023 0.64 +0.1
290,750 - GFF4023 0.75 -0.4
290,855 + GFF4023 0.84 +0.2
290,856 - GFF4023 0.84 -1.0
290,960 + -0.3
291,123 - +0.5
291,123 - -0.1
291,129 - +0.1
291,496 + GFF4024 0.61 +0.4
291,525 + GFF4024 0.68 +0.3
291,830 - -0.3
291,935 + GFF4025 0.16 -1.6
291,960 + GFF4025 0.17 -1.0
291,961 - GFF4025 0.17 -0.1
292,191 - GFF4025 0.33 +0.2
292,270 + GFF4025 0.38 -0.0
292,358 - GFF4025 0.44 -0.3
292,432 - GFF4025 0.49 +0.0
292,452 - GFF4025 0.51 -0.0
292,535 - GFF4025 0.56 -0.0
292,602 - GFF4025 0.61 -0.1
292,646 - GFF4025 0.64 -0.4

Or see this region's nucleotide sequence