Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF396

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
110,803	+		GFF395	0.11	-0.5
110,806	+		GFF395	0.11	+0.2
110,996	+		GFF395	0.30	+0.8
110,997	-		GFF395	0.30	-0.4
110,997	-		GFF395	0.30	-0.1
110,997	-		GFF395	0.30	+0.1
111,013	+		GFF395	0.31	-1.1
111,264	+		GFF395	0.55	-1.1
111,265	-		GFF395	0.56	+0.2
111,423	+		GFF395	0.71	+0.7
111,587	+		GFF395	0.87	+1.0
111,629	+				+0.0
111,841	+		GFF396	0.13	+0.5
111,842	-		GFF396	0.14	-0.2
111,941	+		GFF396	0.24	+0.7
111,942	-		GFF396	0.24	-0.2
111,946	-		GFF396	0.24	-0.5
111,946	-		GFF396	0.24	-1.9
111,946	-		GFF396	0.24	-0.9
112,240	+		GFF396	0.55	-0.0
112,241	-		GFF396	0.55	+0.1
112,241	-		GFF396	0.55	-0.0
112,241	-		GFF396	0.55	+0.2
112,382	+		GFF396	0.70	-0.0
112,382	+		GFF396	0.70	+0.1
112,463	+		GFF396	0.78	-1.1
112,476	-		GFF396	0.79	-0.5
112,513	-		GFF396	0.83	-0.8
113,592	-		GFF397	0.71	+0.4