Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3950 and GFF3951 overlap by 4 nucleotides GFF3951 and GFF3952 are separated by 10 nucleotides GFF3952 and GFF3953 overlap by 1 nucleotides
GFF3950 - Cobyrinic acid A,C-diamide synthase, at 231,052 to 232,431
GFF3950
GFF3951 - Adenosylcobinamide-phosphate synthase (EC 6.3.1.10), at 232,428 to 233,387
GFF3951
GFF3952 - Cobalt-precorrin-8x methylmutase (EC 5.4.1.2), at 233,398 to 234,030
GFF3952
GFF3953 - Cobalt-precorrin-6 synthase, anaerobic, at 234,030 to 235,169
GFF3953
Position (kb) 232
233
234 Strain fitness (log2 ratio) -1
0
1 at 231.590 kb on - strand, within GFF3950 at 231.834 kb on + strand, within GFF3950 at 231.841 kb on + strand, within GFF3950 at 231.965 kb on + strand, within GFF3950 at 231.968 kb on - strand, within GFF3950 at 232.066 kb on + strand, within GFF3950 at 232.169 kb on - strand, within GFF3950 at 232.244 kb on - strand, within GFF3950 at 232.287 kb on + strand, within GFF3950 at 232.427 kb on + strand at 232.594 kb on + strand, within GFF3951 at 233.046 kb on + strand, within GFF3951 at 233.145 kb on + strand, within GFF3951 at 233.148 kb on - strand, within GFF3951 at 233.156 kb on + strand, within GFF3951 at 233.225 kb on + strand, within GFF3951 at 233.225 kb on + strand, within GFF3951 at 233.397 kb on + strand at 233.398 kb on - strand at 233.398 kb on - strand at 233.398 kb on - strand at 233.404 kb on + strand at 233.404 kb on + strand at 233.405 kb on - strand at 233.407 kb on - strand at 233.448 kb on + strand at 233.623 kb on - strand, within GFF3952 at 233.703 kb on + strand, within GFF3952 at 233.703 kb on + strand, within GFF3952 at 233.703 kb on + strand, within GFF3952 at 233.704 kb on - strand, within GFF3952 at 233.704 kb on - strand, within GFF3952 at 233.778 kb on + strand, within GFF3952 at 233.853 kb on + strand, within GFF3952 at 234.011 kb on - strand at 234.090 kb on + strand at 234.090 kb on + strand at 234.091 kb on - strand at 234.092 kb on + strand at 234.092 kb on + strand at 234.143 kb on - strand at 234.146 kb on - strand, within GFF3953 at 234.200 kb on - strand, within GFF3953
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 231,590 - GFF3950 0.39 +0.8 231,834 + GFF3950 0.57 -0.6 231,841 + GFF3950 0.57 +1.0 231,965 + GFF3950 0.66 -0.7 231,968 - GFF3950 0.66 -0.1 232,066 + GFF3950 0.73 +0.5 232,169 - GFF3950 0.81 -0.2 232,244 - GFF3950 0.86 -0.3 232,287 + GFF3950 0.89 +0.7 232,427 + +0.0 232,594 + GFF3951 0.17 +0.4 233,046 + GFF3951 0.64 +0.7 233,145 + GFF3951 0.75 +0.1 233,148 - GFF3951 0.75 +0.4 233,156 + GFF3951 0.76 +0.3 233,225 + GFF3951 0.83 +0.9 233,225 + GFF3951 0.83 +0.5 233,397 + +0.1 233,398 - +0.4 233,398 - +1.5 233,398 - +0.3 233,404 + -0.1 233,404 + +0.6 233,405 - -0.5 233,407 - +0.6 233,448 + +0.1 233,623 - GFF3952 0.36 -0.2 233,703 + GFF3952 0.48 +0.1 233,703 + GFF3952 0.48 +0.6 233,703 + GFF3952 0.48 -0.1 233,704 - GFF3952 0.48 +0.4 233,704 - GFF3952 0.48 +0.8 233,778 + GFF3952 0.60 +0.3 233,853 + GFF3952 0.72 -0.0 234,011 - +0.9 234,090 + +0.4 234,090 + -0.7 234,091 - +0.1 234,092 + +0.5 234,092 + +0.1 234,143 - +0.4 234,146 - GFF3953 0.10 +0.0 234,200 - GFF3953 0.15 -0.6
Or see this region's nucleotide sequence