Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3779

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3778 and GFF3779 are separated by 384 nucleotidesGFF3779 and GFF3780 are separated by 43 nucleotides GFF3778 - Lysine-specific permease, at 44,494 to 45,963 GFF3778 GFF3779 - Colicin I receptor precursor, at 46,348 to 48,300 GFF3779 GFF3780 - Hexose phosphate uptake regulatory protein UhpC, at 48,344 to 49,666 GFF3780 Position (kb) 46 47 48 49Strain fitness (log2 ratio) -2 -1 0 1 2at 45.430 kb on - strand, within GFF3778at 45.443 kb on - strand, within GFF3778at 45.463 kb on + strand, within GFF3778at 45.464 kb on - strand, within GFF3778at 45.706 kb on + strand, within GFF3778at 45.786 kb on + strand, within GFF3778at 45.802 kb on + strand, within GFF3778at 45.802 kb on + strand, within GFF3778at 45.854 kb on - strandat 45.861 kb on + strandat 45.902 kb on + strandat 45.970 kb on - strandat 45.997 kb on - strandat 45.997 kb on - strandat 46.208 kb on + strandat 46.250 kb on + strandat 46.286 kb on + strandat 46.348 kb on - strandat 46.458 kb on + strandat 46.459 kb on - strandat 46.578 kb on + strand, within GFF3779at 46.579 kb on - strand, within GFF3779at 46.633 kb on - strand, within GFF3779at 46.705 kb on - strand, within GFF3779at 46.858 kb on + strand, within GFF3779at 47.176 kb on - strand, within GFF3779at 47.270 kb on - strand, within GFF3779at 47.458 kb on - strand, within GFF3779at 47.585 kb on + strand, within GFF3779at 47.709 kb on - strand, within GFF3779at 47.869 kb on + strand, within GFF3779at 47.869 kb on + strand, within GFF3779at 47.870 kb on - strand, within GFF3779at 47.959 kb on + strand, within GFF3779at 47.959 kb on + strand, within GFF3779at 47.959 kb on + strand, within GFF3779at 47.960 kb on - strand, within GFF3779at 47.960 kb on - strand, within GFF3779at 47.960 kb on - strand, within GFF3779at 47.961 kb on + strand, within GFF3779at 48.076 kb on + strand, within GFF3779at 48.091 kb on + strand, within GFF3779at 48.251 kb on - strandat 48.347 kb on + strandat 48.411 kb on + strandat 48.412 kb on - strandat 48.415 kb on + strandat 48.416 kb on - strandat 48.417 kb on + strandat 48.579 kb on + strand, within GFF3780at 48.624 kb on + strand, within GFF3780at 48.663 kb on - strand, within GFF3780at 48.663 kb on - strand, within GFF3780at 48.733 kb on - strand, within GFF3780at 48.797 kb on + strand, within GFF3780at 48.889 kb on + strand, within GFF3780at 48.920 kb on - strand, within GFF3780at 48.921 kb on + strand, within GFF3780at 48.922 kb on - strand, within GFF3780at 49.022 kb on + strand, within GFF3780at 49.028 kb on - strand, within GFF3780at 49.028 kb on - strand, within GFF3780at 49.049 kb on - strand, within GFF3780at 49.049 kb on - strand, within GFF3780at 49.235 kb on - strand, within GFF3780

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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45,430 - GFF3778 0.64 +0.2
45,443 - GFF3778 0.65 -0.5
45,463 + GFF3778 0.66 -0.0
45,464 - GFF3778 0.66 +0.3
45,706 + GFF3778 0.82 -0.3
45,786 + GFF3778 0.88 +0.0
45,802 + GFF3778 0.89 +0.2
45,802 + GFF3778 0.89 +0.5
45,854 - -0.1
45,861 + +1.0
45,902 + +0.3
45,970 - -0.2
45,997 - -1.1
45,997 - -0.5
46,208 + +0.6
46,250 + +0.4
46,286 + -0.5
46,348 - -0.1
46,458 + +0.0
46,459 - +2.3
46,578 + GFF3779 0.12 +0.3
46,579 - GFF3779 0.12 +0.2
46,633 - GFF3779 0.15 +1.3
46,705 - GFF3779 0.18 +0.3
46,858 + GFF3779 0.26 +1.2
47,176 - GFF3779 0.42 -0.3
47,270 - GFF3779 0.47 +0.4
47,458 - GFF3779 0.57 +1.3
47,585 + GFF3779 0.63 +0.4
47,709 - GFF3779 0.70 -0.5
47,869 + GFF3779 0.78 +0.2
47,869 + GFF3779 0.78 +0.4
47,870 - GFF3779 0.78 -0.1
47,959 + GFF3779 0.82 +0.6
47,959 + GFF3779 0.82 -0.4
47,959 + GFF3779 0.82 +0.3
47,960 - GFF3779 0.83 +1.3
47,960 - GFF3779 0.83 -0.6
47,960 - GFF3779 0.83 -0.2
47,961 + GFF3779 0.83 +0.6
48,076 + GFF3779 0.88 +0.2
48,091 + GFF3779 0.89 -0.1
48,251 - -1.0
48,347 + -1.7
48,411 + +0.0
48,412 - -0.9
48,415 + -0.1
48,416 - +1.7
48,417 + +0.6
48,579 + GFF3780 0.18 +0.1
48,624 + GFF3780 0.21 +0.4
48,663 - GFF3780 0.24 -0.0
48,663 - GFF3780 0.24 -0.9
48,733 - GFF3780 0.29 +1.1
48,797 + GFF3780 0.34 -0.0
48,889 + GFF3780 0.41 +0.3
48,920 - GFF3780 0.44 -0.3
48,921 + GFF3780 0.44 -0.6
48,922 - GFF3780 0.44 -1.7
49,022 + GFF3780 0.51 -0.3
49,028 - GFF3780 0.52 -0.5
49,028 - GFF3780 0.52 +0.1
49,049 - GFF3780 0.53 -0.3
49,049 - GFF3780 0.53 -1.9
49,235 - GFF3780 0.67 -0.3

Or see this region's nucleotide sequence