Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3690 and GFF3691 overlap by 4 nucleotides GFF3691 and GFF3692 are separated by 98 nucleotides GFF3692 and GFF3693 are separated by 72 nucleotides GFF3693 and GFF3694 are separated by 13 nucleotides
GFF3690 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 44,680 to 45,141
GFF3690
GFF3691 - FIG01047584: hypothetical protein, at 45,138 to 45,359
GFF3691
GFF3692 - Threonine dehydratase (EC 4.3.1.19), at 45,458 to 46,672
GFF3692
GFF3693 - FIG01045169: hypothetical protein, at 46,745 to 46,903
GFF3693
GFF3694 - Putative ion:amino acid symporter, at 46,917 to 48,353
GFF3694
Position (kb) 45
46
47 Strain fitness (log2 ratio) -1
0
1 at 44.846 kb on + strand, within GFF3690 at 44.846 kb on + strand, within GFF3690 at 44.847 kb on - strand, within GFF3690 at 44.847 kb on - strand, within GFF3690 at 44.847 kb on - strand, within GFF3690 at 45.880 kb on - strand, within GFF3692 at 45.975 kb on - strand, within GFF3692 at 46.088 kb on + strand, within GFF3692 at 46.441 kb on + strand, within GFF3692 at 47.670 kb on + strand, within GFF3694
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 44,846 + GFF3690 0.36 +1.0 44,846 + GFF3690 0.36 -0.3 44,847 - GFF3690 0.36 +0.6 44,847 - GFF3690 0.36 +0.0 44,847 - GFF3690 0.36 -0.6 45,880 - GFF3692 0.35 +0.3 45,975 - GFF3692 0.43 +0.7 46,088 + GFF3692 0.52 -0.0 46,441 + GFF3692 0.81 +0.6 47,670 + GFF3694 0.52 +0.2
Or see this region's nucleotide sequence