Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3619 and GFF3620 are separated by 126 nucleotides GFF3620 and GFF3621 are separated by 334 nucleotides GFF3621 and GFF3622 are separated by 77 nucleotides
GFF3619 - Superoxide dismutase [Fe] (EC 1.15.1.1), at 371,466 to 372,047
GFF3619
GFF3620 - FIG00545237: hypothetical protein, at 372,174 to 372,995
GFF3620
GFF3621 - Glutaredoxin-related protein, at 373,330 to 373,677
GFF3621
GFF3622 - Ribonuclease T (EC 3.1.13.-), at 373,755 to 374,402
GFF3622
Position (kb) 372
373 Strain fitness (log2 ratio) -1
0
1 at 371.420 kb on + strand at 371.430 kb on + strand at 371.447 kb on - strand at 371.528 kb on - strand, within GFF3619 at 371.528 kb on - strand, within GFF3619 at 371.557 kb on + strand, within GFF3619 at 371.634 kb on - strand, within GFF3619 at 371.852 kb on + strand, within GFF3619 at 371.945 kb on - strand, within GFF3619 at 371.993 kb on + strand at 371.994 kb on - strand at 372.025 kb on - strand at 372.061 kb on - strand at 372.061 kb on - strand at 372.067 kb on - strand at 372.257 kb on + strand, within GFF3620 at 372.308 kb on - strand, within GFF3620 at 372.380 kb on + strand, within GFF3620 at 372.412 kb on + strand, within GFF3620 at 372.413 kb on - strand, within GFF3620 at 372.413 kb on - strand, within GFF3620 at 372.413 kb on - strand, within GFF3620 at 372.458 kb on + strand, within GFF3620 at 372.459 kb on - strand, within GFF3620 at 372.460 kb on + strand, within GFF3620 at 372.469 kb on + strand, within GFF3620 at 372.524 kb on - strand, within GFF3620 at 372.531 kb on - strand, within GFF3620 at 373.238 kb on + strand at 373.388 kb on - strand, within GFF3621 at 373.389 kb on + strand, within GFF3621 at 373.474 kb on + strand, within GFF3621 at 373.601 kb on - strand, within GFF3621 at 373.627 kb on - strand, within GFF3621 at 373.649 kb on - strand at 373.650 kb on + strand at 373.756 kb on + strand at 373.777 kb on - strand at 373.777 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 371,420 + -0.6 371,430 + +0.6 371,447 - -0.5 371,528 - GFF3619 0.11 +0.4 371,528 - GFF3619 0.11 +0.1 371,557 + GFF3619 0.16 -0.5 371,634 - GFF3619 0.29 -1.0 371,852 + GFF3619 0.66 -1.3 371,945 - GFF3619 0.82 -0.3 371,993 + +0.1 371,994 - +0.7 372,025 - +0.1 372,061 - -0.1 372,061 - +0.2 372,067 - -0.0 372,257 + GFF3620 0.10 +0.6 372,308 - GFF3620 0.16 +0.5 372,380 + GFF3620 0.25 +0.1 372,412 + GFF3620 0.29 -0.4 372,413 - GFF3620 0.29 +0.9 372,413 - GFF3620 0.29 -0.3 372,413 - GFF3620 0.29 +0.3 372,458 + GFF3620 0.35 +0.2 372,459 - GFF3620 0.35 +0.5 372,460 + GFF3620 0.35 -0.0 372,469 + GFF3620 0.36 +0.1 372,524 - GFF3620 0.43 +0.3 372,531 - GFF3620 0.43 +0.6 373,238 + +0.1 373,388 - GFF3621 0.17 -0.2 373,389 + GFF3621 0.17 +0.0 373,474 + GFF3621 0.41 -0.0 373,601 - GFF3621 0.78 +0.1 373,627 - GFF3621 0.85 +0.0 373,649 - +0.2 373,650 + +0.4 373,756 + +0.1 373,777 - -0.4 373,777 - +0.1
Or see this region's nucleotide sequence