Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3547
Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Acanthamoeba sp., muxed culture-2 |
---|---|---|---|---|---|
remove | |||||
299,019 | + | GFF3546 | 0.23 | +0.1 | |
299,286 | + | GFF3546 | 0.46 | +0.2 | |
299,418 | - | GFF3546 | 0.57 | +0.0 | |
299,418 | - | GFF3546 | 0.57 | +0.7 | |
299,536 | + | GFF3546 | 0.68 | -0.3 | |
299,708 | + | GFF3546 | 0.83 | +0.0 | |
300,393 | + | GFF3547 | 0.30 | -1.3 | |
300,683 | - | GFF3547 | 0.48 | -0.1 | |
300,974 | - | GFF3547 | 0.66 | +0.0 | |
301,686 | - | +0.2 | |||
301,828 | + | GFF3548 | 0.21 | -1.2 | |
301,898 | - | GFF3548 | 0.30 | -1.1 | |
301,928 | - | GFF3548 | 0.34 | -0.2 | |
302,040 | + | GFF3548 | 0.49 | -0.9 | |
302,139 | + | GFF3548 | 0.62 | -1.1 | |
302,139 | + | GFF3548 | 0.62 | -0.3 | |
302,139 | + | GFF3548 | 0.62 | +0.2 | |
302,195 | + | GFF3548 | 0.69 | -1.4 | |
302,196 | - | GFF3548 | 0.69 | +1.0 | |
302,246 | + | GFF3548 | 0.76 | +1.0 | |
302,434 | - | -0.5 | |||
302,505 | - | +0.5 | |||
302,505 | - | +0.3 | |||
302,505 | - | -0.2 |
Or see this region's nucleotide sequence