Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3509

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
260,893	-		GFF3508	0.77	-0.2
261,005	+		GFF3508	0.82	-0.2
261,006	-		GFF3508	0.82	-1.0
261,006	-		GFF3508	0.82	-0.1
261,007	+		GFF3508	0.82	+0.3
261,008	-		GFF3508	0.82	-0.0
261,122	+		GFF3508	0.87	-0.4
261,410	+				+0.2
261,500	+				+0.3
261,532	+				-0.1
261,535	-				+0.8
261,535	-				-0.1
261,819	+		GFF3509	0.14	-1.2
261,822	+		GFF3509	0.16	-0.6
261,826	+		GFF3509	0.17	-0.1
261,826	+		GFF3509	0.17	-0.2
261,827	-		GFF3509	0.18	-0.2
261,828	+		GFF3509	0.18	-1.1
261,828	+		GFF3509	0.18	+0.1
261,907	-		GFF3509	0.51	-0.0
261,910	+		GFF3509	0.52	-1.0
261,911	-		GFF3509	0.52	-2.1
261,961	-		GFF3509	0.73	+0.0
262,127	-				-0.5
262,129	+				-1.3
262,175	+				-0.9
262,575	-		GFF3510	0.32	+0.7
262,678	-		GFF3510	0.40	+0.1
262,681	-		GFF3510	0.40	-0.4
262,717	+		GFF3510	0.42	+0.1
262,718	-		GFF3510	0.42	+0.4
262,749	-		GFF3510	0.45	-0.5
262,749	-		GFF3510	0.45	-0.0
262,812	-		GFF3510	0.49	-0.2
262,967	+		GFF3510	0.60	-0.3