Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3458 and GFF3459 are separated by 121 nucleotides GFF3459 and GFF3460 are separated by 7 nucleotides GFF3460 and GFF3461 are separated by 61 nucleotides GFF3461 and GFF3462 are separated by 254 nucleotides GFF3462 and GFF3463 are separated by 68 nucleotides
GFF3458 - Putative membrane protein, at 214,235 to 214,876
GFF3458
GFF3459 - FIG01045255: hypothetical protein, at 214,998 to 215,183
GFF3459
GFF3460 - Transglycosylase associated protein, at 215,191 to 215,439
GFF3460
GFF3461 - hypothetical protein, at 215,501 to 215,617
GFF3461
GFF3462 - FIG00638802: hypothetical protein, at 215,872 to 216,123
GFF3462
GFF3463 - FIG00638667: hypothetical protein, at 216,192 to 216,503
GFF3463
Position (kb) 215
216 Strain fitness (log2 ratio) -2
-1
0
1 at 214.228 kb on + strand at 214.270 kb on + strand at 214.270 kb on + strand at 214.409 kb on - strand, within GFF3458 at 214.409 kb on - strand, within GFF3458 at 214.409 kb on - strand, within GFF3458 at 214.411 kb on - strand, within GFF3458 at 214.486 kb on + strand, within GFF3458 at 214.732 kb on + strand, within GFF3458 at 214.780 kb on + strand, within GFF3458 at 215.171 kb on - strand at 215.280 kb on + strand, within GFF3460 at 215.332 kb on - strand, within GFF3460 at 215.332 kb on - strand, within GFF3460 at 215.485 kb on - strand at 215.537 kb on + strand, within GFF3461 at 215.680 kb on - strand at 215.683 kb on - strand at 215.711 kb on - strand at 215.860 kb on + strand at 215.903 kb on + strand, within GFF3462 at 216.150 kb on + strand at 216.223 kb on + strand at 216.281 kb on - strand, within GFF3463
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 214,228 + -0.0 214,270 + +0.1 214,270 + -0.0 214,409 - GFF3458 0.27 +0.5 214,409 - GFF3458 0.27 -0.1 214,409 - GFF3458 0.27 +0.1 214,411 - GFF3458 0.27 +0.3 214,486 + GFF3458 0.39 +0.3 214,732 + GFF3458 0.77 -0.3 214,780 + GFF3458 0.85 -0.5 215,171 - -1.4 215,280 + GFF3460 0.36 +0.3 215,332 - GFF3460 0.57 -0.1 215,332 - GFF3460 0.57 -2.0 215,485 - -0.7 215,537 + GFF3461 0.31 -0.4 215,680 - -0.1 215,683 - -0.0 215,711 - -0.7 215,860 + -0.4 215,903 + GFF3462 0.12 -0.1 216,150 + -0.4 216,223 + +0.9 216,281 - GFF3463 0.29 -0.0
Or see this region's nucleotide sequence