Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3313

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
86,788	-				+0.7
87,222	-		GFF3313	0.11	-1.3
87,286	+		GFF3313	0.18	-1.7
87,337	+		GFF3313	0.23	+0.2
87,420	+		GFF3313	0.32	+0.0
87,420	+		GFF3313	0.32	-0.4
87,421	-		GFF3313	0.32	-0.1
87,421	-		GFF3313	0.32	-0.3
87,440	-		GFF3313	0.34	-0.5
87,652	+		GFF3313	0.57	-0.0
87,743	+		GFF3313	0.67	+0.1
87,851	-		GFF3313	0.78	-0.3
88,056	+				+0.3
88,056	+				-0.8
88,057	-				+0.3
88,057	-				-0.0
88,100	-				-0.3
88,160	-				+0.0
88,166	-				-0.3
88,188	-				+0.2
88,193	-				+1.0
88,205	+				-0.1
88,207	+				-1.0
88,521	+		GFF3314	0.52	+0.7
88,521	+		GFF3314	0.52	-0.0
88,522	-		GFF3314	0.52	+0.3
88,522	-		GFF3314	0.52	-1.2
88,526	-		GFF3314	0.52	+0.6
88,526	-		GFF3314	0.52	+0.2
88,562	-		GFF3314	0.57	+0.4
88,874	+				+1.0
88,875	-				-0.5