Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3171

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
175,776	+				+0.7
176,154	-		GFF3171	0.55	+0.1
176,173	-		GFF3171	0.57	-0.1
176,176	+		GFF3171	0.58	-0.8
176,177	-		GFF3171	0.58	-1.2
176,265	+		GFF3171	0.68	-0.1
176,266	-		GFF3171	0.69	+0.0
176,266	-		GFF3171	0.69	-0.2
176,355	+		GFF3171	0.79	+0.7
176,356	-		GFF3171	0.80	-0.2
176,427	+		GFF3171	0.88	-1.4
176,528	-				-0.4
176,571	-				+0.1
176,585	-				-0.1
177,050	+				-0.8
177,051	-				-0.1
177,086	+				-0.1
177,223	+		GFF3173	0.22	-0.3
177,279	-		GFF3173	0.31	+0.3
177,284	+		GFF3173	0.32	+0.2
177,285	-		GFF3173	0.32	-0.7
177,285	-		GFF3173	0.32	-0.1
177,307	-		GFF3173	0.36	-0.2
177,393	-		GFF3173	0.50	-0.3
177,511	+		GFF3173	0.69	-0.6