Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3144 and GFF3145 are separated by 27 nucleotides GFF3145 and GFF3146 overlap by 1 nucleotides GFF3146 and GFF3147 are separated by 24 nucleotides GFF3147 and GFF3148 overlap by 4 nucleotides
GFF3144 - Topoisomerase IV subunit B (EC 5.99.1.-), at 149,097 to 150,989
GFF3144
GFF3145 - Putative esterase, FIGfam005057, at 151,017 to 151,598
GFF3145
GFF3146 - '3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)' transl_table=11, at 151,598 to 152,425
GFF3146
GFF3147 - FIG074102: hypothetical protein, at 152,450 to 152,872
GFF3147
GFF3148 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 152,869 to 153,501
GFF3148
Position (kb) 151
152
153 Strain fitness (log2 ratio) -1
0
1 at 151.127 kb on - strand, within GFF3145 at 151.127 kb on - strand, within GFF3145 at 151.255 kb on + strand, within GFF3145 at 151.256 kb on - strand, within GFF3145 at 151.256 kb on - strand, within GFF3145 at 151.256 kb on - strand, within GFF3145 at 151.352 kb on + strand, within GFF3145 at 151.715 kb on - strand, within GFF3146 at 151.816 kb on + strand, within GFF3146 at 152.436 kb on + strand at 152.568 kb on + strand, within GFF3147 at 152.664 kb on + strand, within GFF3147 at 152.664 kb on + strand, within GFF3147 at 152.704 kb on + strand, within GFF3147 at 152.744 kb on + strand, within GFF3147 at 153.007 kb on - strand, within GFF3148 at 153.037 kb on - strand, within GFF3148 at 153.076 kb on - strand, within GFF3148 at 153.076 kb on - strand, within GFF3148 at 153.113 kb on + strand, within GFF3148 at 153.205 kb on + strand, within GFF3148
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 151,127 - GFF3145 0.19 -0.5 151,127 - GFF3145 0.19 -0.6 151,255 + GFF3145 0.41 +0.0 151,256 - GFF3145 0.41 -0.4 151,256 - GFF3145 0.41 -0.2 151,256 - GFF3145 0.41 +0.2 151,352 + GFF3145 0.58 +0.6 151,715 - GFF3146 0.14 +0.0 151,816 + GFF3146 0.26 -1.6 152,436 + +0.0 152,568 + GFF3147 0.28 +0.7 152,664 + GFF3147 0.51 +0.6 152,664 + GFF3147 0.51 +0.3 152,704 + GFF3147 0.60 +0.4 152,744 + GFF3147 0.70 +0.3 153,007 - GFF3148 0.22 -0.1 153,037 - GFF3148 0.27 -0.3 153,076 - GFF3148 0.33 -0.8 153,076 - GFF3148 0.33 -0.2 153,113 + GFF3148 0.39 -0.3 153,205 + GFF3148 0.53 +0.3
Or see this region's nucleotide sequence