Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3141 and GFF3142 are separated by 31 nucleotides GFF3142 and GFF3143 are separated by 4 nucleotides GFF3143 and GFF3144 are separated by 3 nucleotides GFF3144 and GFF3145 are separated by 27 nucleotides GFF3145 and GFF3146 overlap by 1 nucleotides
GFF3141 - Modulator of drug activity B, at 148,045 to 148,626
GFF3141
GFF3142 - FIG00896075: hypothetical protein, at 148,658 to 148,972
GFF3142
GFF3143 - hypothetical protein, at 148,977 to 149,093
GFF3143
GFF3144 - Topoisomerase IV subunit B (EC 5.99.1.-), at 149,097 to 150,989
GFF3144
GFF3145 - Putative esterase, FIGfam005057, at 151,017 to 151,598
GFF3145
GFF3146 - '3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)' transl_table=11, at 151,598 to 152,425
GFF3146
Position (kb) 149
150
151 Strain fitness (log2 ratio) -1
0
1 at 148.186 kb on + strand, within GFF3141 at 148.288 kb on - strand, within GFF3141 at 148.325 kb on - strand, within GFF3141 at 148.401 kb on + strand, within GFF3141 at 148.470 kb on - strand, within GFF3141 at 148.476 kb on - strand, within GFF3141 at 148.584 kb on + strand at 148.653 kb on + strand at 148.654 kb on - strand at 148.754 kb on - strand, within GFF3142 at 148.898 kb on - strand, within GFF3142 at 148.978 kb on + strand at 149.079 kb on + strand, within GFF3143 at 149.079 kb on + strand, within GFF3143 at 151.127 kb on - strand, within GFF3145 at 151.127 kb on - strand, within GFF3145 at 151.255 kb on + strand, within GFF3145 at 151.256 kb on - strand, within GFF3145 at 151.256 kb on - strand, within GFF3145 at 151.256 kb on - strand, within GFF3145 at 151.352 kb on + strand, within GFF3145 at 151.715 kb on - strand, within GFF3146 at 151.816 kb on + strand, within GFF3146
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 148,186 + GFF3141 0.24 -0.1 148,288 - GFF3141 0.42 -0.1 148,325 - GFF3141 0.48 -0.1 148,401 + GFF3141 0.61 -0.0 148,470 - GFF3141 0.73 -0.3 148,476 - GFF3141 0.74 +1.5 148,584 + -0.1 148,653 + -0.5 148,654 - -0.0 148,754 - GFF3142 0.30 +1.2 148,898 - GFF3142 0.76 -0.5 148,978 + -0.3 149,079 + GFF3143 0.87 +1.2 149,079 + GFF3143 0.87 +0.6 151,127 - GFF3145 0.19 -0.5 151,127 - GFF3145 0.19 -0.6 151,255 + GFF3145 0.41 +0.0 151,256 - GFF3145 0.41 -0.4 151,256 - GFF3145 0.41 -0.2 151,256 - GFF3145 0.41 +0.2 151,352 + GFF3145 0.58 +0.6 151,715 - GFF3146 0.14 +0.0 151,816 + GFF3146 0.26 -1.6
Or see this region's nucleotide sequence