Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3019

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
32,663	+				+0.0
32,664	-				-0.4
32,665	+				+0.3
32,665	+				-0.1
32,665	+				+0.4
32,666	-				+0.1
32,724	+				+0.2
32,725	-				-0.2
32,725	-				-1.3
32,743	+				+0.4
32,813	-		GFF3018	0.14	-0.2
32,975	-		GFF3018	0.40	-0.3
32,983	-		GFF3018	0.41	+0.8
32,983	-		GFF3018	0.41	-0.7
33,050	-		GFF3018	0.51	-0.7
33,117	-		GFF3018	0.62	+1.5
33,242	+		GFF3018	0.82	-0.2
33,500	+				+0.3
33,620	+				+0.5
33,624	-				+0.1
33,648	-		GFF3019	0.10	-0.8
33,827	+		GFF3019	0.31	+0.0
33,896	+		GFF3019	0.39	-0.1
34,016	-		GFF3019	0.53	-0.4
34,178	+		GFF3019	0.72	-0.4
34,239	-		GFF3019	0.79	-0.9
34,263	+		GFF3019	0.82	-2.8
34,307	+		GFF3019	0.87	+1.1
34,310	+		GFF3019	0.87	-0.1
34,339	+				-0.9
34,339	+				+0.1
34,339	+				+0.8
34,340	-				-0.3
34,641	+				-0.1
34,647	-				+0.1