Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2990

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
7,919	+		GFF2989	0.48	-0.6
8,024	+		GFF2989	0.54	-0.3
8,081	+		GFF2989	0.58	-2.1
8,258	+		GFF2989	0.68	-1.5
8,467	-		GFF2989	0.80	-0.6
8,504	-		GFF2989	0.82	-0.9
8,730	+				-0.2
8,742	+				-0.1
8,742	+				-0.5
8,742	+				-0.6
8,824	-				-0.3
8,824	-				-0.1
8,824	-				+0.2
8,901	+		GFF2990	0.11	-2.2
8,902	-		GFF2990	0.11	+0.5
8,916	-		GFF2990	0.13	+0.5
8,961	+		GFF2990	0.19	+0.7
9,007	+		GFF2990	0.26	+0.4
9,058	+		GFF2990	0.33	+1.7
9,068	-		GFF2990	0.34	-0.1
9,114	+		GFF2990	0.41	-0.5
9,139	+		GFF2990	0.44	-0.0
9,161	+		GFF2990	0.47	-0.1
9,161	+		GFF2990	0.47	-1.4
9,162	-		GFF2990	0.48	-0.9
9,162	-		GFF2990	0.48	+0.0
9,231	+		GFF2990	0.57	-1.6
9,337	+		GFF2990	0.72	-0.1
9,337	+		GFF2990	0.72	-0.1
9,338	-		GFF2990	0.72	-0.1
9,361	-		GFF2990	0.75	+0.2
9,718	+		GFF2991	0.18	-2.2
9,719	-		GFF2991	0.18	-2.9
9,719	-		GFF2991	0.18	-2.0
9,767	+		GFF2991	0.23	-2.1
9,856	+		GFF2991	0.33	-0.3
10,028	+		GFF2991	0.52	-0.3
10,044	+		GFF2991	0.54	-2.6
10,045	-		GFF2991	0.54	-1.3
10,491	+				+0.2
10,492	-				-0.1
10,492	-				+0.2
10,492	-				-1.6
10,492	-				-0.2