Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2956

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2955 and GFF2956 are separated by 671 nucleotidesGFF2956 and GFF2957 are separated by 9 nucleotides GFF2955 - COG1242: Predicted Fe-S oxidoreductase, at 34,398 to 35,327 GFF2955 GFF2956 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 35,999 to 40,459 GFF2956 GFF2957 - Glutamate synthase [NADPH] small chain (EC 1.4.1.13), at 40,469 to 41,887 GFF2957 Position (kb) 35 36 37 38 39 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 35.026 kb on + strand, within GFF2955at 35.027 kb on - strand, within GFF2955at 35.080 kb on + strand, within GFF2955at 35.234 kb on + strand, within GFF2955at 35.258 kb on + strandat 35.304 kb on - strandat 35.310 kb on + strandat 35.533 kb on + strandat 35.622 kb on + strandat 35.659 kb on - strandat 35.659 kb on - strandat 35.836 kb on - strandat 35.901 kb on + strandat 35.907 kb on + strandat 35.998 kb on + strandat 35.999 kb on - strandat 35.999 kb on - strandat 36.006 kb on - strandat 36.029 kb on - strandat 36.057 kb on + strandat 36.057 kb on + strandat 36.057 kb on + strandat 36.058 kb on - strandat 36.058 kb on - strandat 36.058 kb on - strandat 36.058 kb on - strandat 36.175 kb on - strandat 36.265 kb on + strandat 36.525 kb on + strand, within GFF2956at 36.525 kb on + strand, within GFF2956at 36.526 kb on - strand, within GFF2956at 36.526 kb on - strand, within GFF2956at 36.526 kb on - strand, within GFF2956at 36.555 kb on - strand, within GFF2956at 36.569 kb on - strand, within GFF2956at 36.761 kb on - strand, within GFF2956at 36.765 kb on - strand, within GFF2956at 36.767 kb on - strand, within GFF2956at 36.985 kb on + strand, within GFF2956at 37.046 kb on - strand, within GFF2956at 37.079 kb on + strand, within GFF2956at 37.096 kb on + strand, within GFF2956at 37.096 kb on + strand, within GFF2956at 37.096 kb on + strand, within GFF2956at 37.097 kb on - strand, within GFF2956at 37.127 kb on - strand, within GFF2956at 37.213 kb on + strand, within GFF2956at 37.214 kb on - strand, within GFF2956at 37.214 kb on - strand, within GFF2956at 37.262 kb on + strand, within GFF2956at 37.262 kb on + strand, within GFF2956at 37.263 kb on - strand, within GFF2956at 37.382 kb on - strand, within GFF2956at 37.674 kb on - strand, within GFF2956at 37.674 kb on - strand, within GFF2956at 37.849 kb on + strand, within GFF2956at 37.950 kb on + strand, within GFF2956at 37.950 kb on + strand, within GFF2956at 37.951 kb on - strand, within GFF2956at 38.014 kb on + strand, within GFF2956at 38.018 kb on + strand, within GFF2956at 38.129 kb on + strand, within GFF2956at 38.137 kb on + strand, within GFF2956at 38.138 kb on - strand, within GFF2956at 38.138 kb on - strand, within GFF2956at 38.172 kb on - strand, within GFF2956at 38.354 kb on + strand, within GFF2956at 38.355 kb on - strand, within GFF2956at 38.419 kb on - strand, within GFF2956at 38.506 kb on - strand, within GFF2956at 38.564 kb on - strand, within GFF2956at 38.601 kb on + strand, within GFF2956at 38.927 kb on - strand, within GFF2956at 38.937 kb on + strand, within GFF2956at 38.937 kb on + strand, within GFF2956at 39.048 kb on - strand, within GFF2956at 39.304 kb on + strand, within GFF2956at 39.414 kb on - strand, within GFF2956at 39.610 kb on + strand, within GFF2956at 39.750 kb on - strand, within GFF2956at 39.861 kb on + strand, within GFF2956at 39.861 kb on + strand, within GFF2956at 39.861 kb on + strand, within GFF2956at 39.862 kb on - strand, within GFF2956at 39.862 kb on - strand, within GFF2956at 39.862 kb on - strand, within GFF2956at 39.862 kb on - strand, within GFF2956at 39.863 kb on + strand, within GFF2956at 39.864 kb on - strand, within GFF2956at 39.887 kb on + strand, within GFF2956at 39.888 kb on - strand, within GFF2956at 39.990 kb on - strand, within GFF2956at 40.103 kb on + strandat 40.103 kb on + strandat 40.104 kb on - strandat 40.181 kb on + strandat 40.233 kb on + strandat 40.234 kb on - strandat 40.240 kb on - strandat 40.240 kb on - strandat 40.309 kb on + strandat 40.420 kb on + strandat 40.654 kb on + strand, within GFF2957at 40.654 kb on + strand, within GFF2957at 40.654 kb on + strand, within GFF2957at 40.655 kb on - strand, within GFF2957at 40.655 kb on - strand, within GFF2957at 40.655 kb on - strand, within GFF2957at 40.655 kb on - strand, within GFF2957at 40.658 kb on + strand, within GFF2957at 40.658 kb on + strand, within GFF2957at 40.658 kb on + strand, within GFF2957at 40.659 kb on - strand, within GFF2957at 40.659 kb on - strand, within GFF2957at 40.659 kb on - strand, within GFF2957at 41.113 kb on + strand, within GFF2957at 41.136 kb on + strand, within GFF2957at 41.173 kb on - strand, within GFF2957at 41.311 kb on + strand, within GFF2957at 41.312 kb on + strand, within GFF2957at 41.312 kb on + strand, within GFF2957at 41.313 kb on - strand, within GFF2957at 41.313 kb on - strand, within GFF2957at 41.313 kb on - strand, within GFF2957at 41.410 kb on - strand, within GFF2957at 41.410 kb on - strand, within GFF2957

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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35,026 + GFF2955 0.68 +0.3
35,027 - GFF2955 0.68 +0.4
35,080 + GFF2955 0.73 +0.4
35,234 + GFF2955 0.90 -1.2
35,258 + -0.5
35,304 - -0.1
35,310 + +1.0
35,533 + +1.0
35,622 + +0.4
35,659 - +0.2
35,659 - +0.0
35,836 - -0.2
35,901 + -0.4
35,907 + +1.1
35,998 + -2.0
35,999 - +0.2
35,999 - +0.9
36,006 - +0.7
36,029 - -0.4
36,057 + +0.4
36,057 + +0.4
36,057 + -0.4
36,058 - -1.1
36,058 - +0.4
36,058 - -0.2
36,058 - +0.1
36,175 - -0.2
36,265 + -0.0
36,525 + GFF2956 0.12 -0.6
36,525 + GFF2956 0.12 +0.3
36,526 - GFF2956 0.12 -0.2
36,526 - GFF2956 0.12 +2.3
36,526 - GFF2956 0.12 +0.6
36,555 - GFF2956 0.12 +1.7
36,569 - GFF2956 0.13 +0.2
36,761 - GFF2956 0.17 -0.0
36,765 - GFF2956 0.17 +0.2
36,767 - GFF2956 0.17 -0.3
36,985 + GFF2956 0.22 -0.2
37,046 - GFF2956 0.23 +0.5
37,079 + GFF2956 0.24 +0.3
37,096 + GFF2956 0.25 +0.4
37,096 + GFF2956 0.25 +0.7
37,096 + GFF2956 0.25 -0.9
37,097 - GFF2956 0.25 -0.0
37,127 - GFF2956 0.25 +0.5
37,213 + GFF2956 0.27 -0.4
37,214 - GFF2956 0.27 +0.3
37,214 - GFF2956 0.27 +0.3
37,262 + GFF2956 0.28 +1.7
37,262 + GFF2956 0.28 -1.3
37,263 - GFF2956 0.28 +0.3
37,382 - GFF2956 0.31 -0.2
37,674 - GFF2956 0.38 +0.9
37,674 - GFF2956 0.38 -0.5
37,849 + GFF2956 0.41 +0.0
37,950 + GFF2956 0.44 -0.4
37,950 + GFF2956 0.44 -1.1
37,951 - GFF2956 0.44 +0.7
38,014 + GFF2956 0.45 +0.4
38,018 + GFF2956 0.45 -0.0
38,129 + GFF2956 0.48 +0.1
38,137 + GFF2956 0.48 +1.5
38,138 - GFF2956 0.48 -0.1
38,138 - GFF2956 0.48 -0.1
38,172 - GFF2956 0.49 -0.9
38,354 + GFF2956 0.53 -1.1
38,355 - GFF2956 0.53 -0.2
38,419 - GFF2956 0.54 -0.1
38,506 - GFF2956 0.56 +1.4
38,564 - GFF2956 0.57 -0.5
38,601 + GFF2956 0.58 +0.0
38,927 - GFF2956 0.66 +0.4
38,937 + GFF2956 0.66 +0.6
38,937 + GFF2956 0.66 -0.1
39,048 - GFF2956 0.68 +0.8
39,304 + GFF2956 0.74 +0.4
39,414 - GFF2956 0.77 -0.1
39,610 + GFF2956 0.81 -0.0
39,750 - GFF2956 0.84 +0.0
39,861 + GFF2956 0.87 +0.0
39,861 + GFF2956 0.87 +0.8
39,861 + GFF2956 0.87 -0.1
39,862 - GFF2956 0.87 -0.3
39,862 - GFF2956 0.87 +1.2
39,862 - GFF2956 0.87 +0.4
39,862 - GFF2956 0.87 +0.3
39,863 + GFF2956 0.87 -0.0
39,864 - GFF2956 0.87 +0.1
39,887 + GFF2956 0.87 -0.0
39,888 - GFF2956 0.87 +0.5
39,990 - GFF2956 0.89 +0.3
40,103 + +0.1
40,103 + -1.9
40,104 - +0.1
40,181 + -0.8
40,233 + +0.6
40,234 - +0.3
40,240 - +0.0
40,240 - +0.2
40,309 + -0.3
40,420 + -0.9
40,654 + GFF2957 0.13 -0.1
40,654 + GFF2957 0.13 +0.3
40,654 + GFF2957 0.13 +0.4
40,655 - GFF2957 0.13 +0.1
40,655 - GFF2957 0.13 -0.4
40,655 - GFF2957 0.13 +1.0
40,655 - GFF2957 0.13 -0.1
40,658 + GFF2957 0.13 +0.4
40,658 + GFF2957 0.13 +0.4
40,658 + GFF2957 0.13 +0.8
40,659 - GFF2957 0.13 +0.5
40,659 - GFF2957 0.13 -0.1
40,659 - GFF2957 0.13 +0.1
41,113 + GFF2957 0.45 -0.1
41,136 + GFF2957 0.47 -0.0
41,173 - GFF2957 0.50 -0.5
41,311 + GFF2957 0.59 -0.1
41,312 + GFF2957 0.59 +0.6
41,312 + GFF2957 0.59 -0.0
41,313 - GFF2957 0.59 +0.3
41,313 - GFF2957 0.59 -0.9
41,313 - GFF2957 0.59 -0.1
41,410 - GFF2957 0.66 -0.8
41,410 - GFF2957 0.66 -0.3

Or see this region's nucleotide sequence