Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2844 and GFF2845 are separated by 193 nucleotides GFF2845 and GFF2846 are separated by 19 nucleotides GFF2846 and GFF2847 are separated by 97 nucleotides
GFF2844 - Probable protease HtpX (EC 3.4.24.-), at 365,331 to 366,212
GFF2844
GFF2845 - Tail-specific protease precursor (EC 3.4.21.102), at 366,406 to 368,454
GFF2845
GFF2846 - ProQ: influences osmotic activation of compatible solute ProP, at 368,474 to 369,160
GFF2846
GFF2847 - Free methionine-(R)-sulfoxide reductase, contains GAF domain, at 369,258 to 369,755
GFF2847
Position (kb) 366
367
368
369 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 365.429 kb on + strand, within GFF2844 at 365.468 kb on - strand, within GFF2844 at 365.922 kb on - strand, within GFF2844 at 366.248 kb on - strand at 366.248 kb on - strand at 366.337 kb on + strand at 366.550 kb on - strand at 366.577 kb on - strand at 367.021 kb on - strand, within GFF2845 at 367.065 kb on - strand, within GFF2845 at 367.358 kb on + strand, within GFF2845 at 367.672 kb on - strand, within GFF2845 at 367.681 kb on - strand, within GFF2845 at 367.682 kb on + strand, within GFF2845 at 367.744 kb on - strand, within GFF2845 at 367.772 kb on + strand, within GFF2845 at 368.215 kb on - strand, within GFF2845 at 368.217 kb on - strand, within GFF2845 at 368.284 kb on - strand at 368.376 kb on + strand at 368.377 kb on - strand at 368.377 kb on - strand at 368.380 kb on - strand at 368.380 kb on - strand at 368.440 kb on - strand at 368.559 kb on - strand, within GFF2846 at 368.720 kb on - strand, within GFF2846 at 368.939 kb on - strand, within GFF2846 at 368.946 kb on + strand, within GFF2846 at 368.947 kb on - strand, within GFF2846 at 368.968 kb on + strand, within GFF2846 at 368.971 kb on - strand, within GFF2846 at 368.979 kb on - strand, within GFF2846 at 368.979 kb on - strand, within GFF2846 at 369.137 kb on - strand at 369.146 kb on - strand at 369.174 kb on + strand at 369.220 kb on - strand at 369.221 kb on + strand at 369.222 kb on - strand at 369.236 kb on + strand at 369.244 kb on - strand at 369.244 kb on - strand at 369.380 kb on + strand, within GFF2847 at 369.385 kb on - strand, within GFF2847 at 369.385 kb on - strand, within GFF2847
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 365,429 + GFF2844 0.11 -0.1 365,468 - GFF2844 0.16 -1.0 365,922 - GFF2844 0.67 -1.1 366,248 - -0.1 366,248 - -0.4 366,337 + +0.7 366,550 - -0.9 366,577 - -2.7 367,021 - GFF2845 0.30 -1.7 367,065 - GFF2845 0.32 -1.8 367,358 + GFF2845 0.46 -1.4 367,672 - GFF2845 0.62 -1.9 367,681 - GFF2845 0.62 +2.4 367,682 + GFF2845 0.62 -1.4 367,744 - GFF2845 0.65 -2.8 367,772 + GFF2845 0.67 -0.7 368,215 - GFF2845 0.88 -2.4 368,217 - GFF2845 0.88 -2.9 368,284 - -1.8 368,376 + -1.0 368,377 - -4.0 368,377 - -1.7 368,380 - -1.7 368,380 - +1.9 368,440 - -0.4 368,559 - GFF2846 0.12 -0.4 368,720 - GFF2846 0.36 -0.5 368,939 - GFF2846 0.68 -1.1 368,946 + GFF2846 0.69 -0.9 368,947 - GFF2846 0.69 -0.4 368,968 + GFF2846 0.72 +0.3 368,971 - GFF2846 0.72 -0.1 368,979 - GFF2846 0.74 +0.7 368,979 - GFF2846 0.74 -0.9 369,137 - -0.9 369,146 - -0.8 369,174 + -3.5 369,220 - -0.5 369,221 + -0.3 369,222 - -0.3 369,236 + -0.4 369,244 - +0.1 369,244 - +0.2 369,380 + GFF2847 0.24 -0.2 369,385 - GFF2847 0.26 +2.1 369,385 - GFF2847 0.26 +0.0
Or see this region's nucleotide sequence