Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2826 and GFF2827 are separated by 3 nucleotides GFF2827 and GFF2828 are separated by 329 nucleotides
GFF2826 - Para-aminobenzoate synthase, aminase component (EC 2.6.1.85), at 346,438 to 347,802
GFF2826
GFF2827 - Hypothetical nudix hydrolase YeaB, at 347,806 to 348,384
GFF2827
GFF2828 - L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17), at 348,714 to 350,012
GFF2828
Position (kb) 347
348
349 Strain fitness (log2 ratio) -1
0
1 at 346.810 kb on - strand, within GFF2826 at 346.909 kb on + strand, within GFF2826 at 347.265 kb on + strand, within GFF2826 at 347.617 kb on - strand, within GFF2826 at 347.659 kb on - strand, within GFF2826 at 347.659 kb on - strand, within GFF2826 at 347.659 kb on - strand, within GFF2826 at 347.659 kb on - strand, within GFF2826 at 347.804 kb on - strand at 347.885 kb on + strand, within GFF2827 at 348.159 kb on + strand, within GFF2827 at 348.316 kb on + strand, within GFF2827 at 348.388 kb on + strand at 348.389 kb on - strand at 348.464 kb on - strand at 348.466 kb on - strand at 348.466 kb on - strand at 348.466 kb on - strand at 348.467 kb on + strand at 348.467 kb on + strand at 348.468 kb on - strand at 348.468 kb on - strand at 348.468 kb on - strand at 348.472 kb on - strand at 348.521 kb on - strand at 348.586 kb on - strand at 348.601 kb on - strand at 348.602 kb on + strand at 348.603 kb on - strand at 348.641 kb on + strand at 348.641 kb on + strand at 348.645 kb on - strand at 348.671 kb on + strand at 348.672 kb on - strand at 348.725 kb on + strand at 348.760 kb on + strand at 348.796 kb on - strand at 348.846 kb on - strand, within GFF2828 at 348.891 kb on - strand, within GFF2828 at 349.062 kb on + strand, within GFF2828 at 349.062 kb on + strand, within GFF2828 at 349.063 kb on - strand, within GFF2828 at 349.074 kb on + strand, within GFF2828 at 349.077 kb on + strand, within GFF2828 at 349.147 kb on + strand, within GFF2828 at 349.247 kb on + strand, within GFF2828 at 349.248 kb on - strand, within GFF2828 at 349.383 kb on - strand, within GFF2828
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 346,810 - GFF2826 0.27 +0.0 346,909 + GFF2826 0.35 +0.1 347,265 + GFF2826 0.61 +0.0 347,617 - GFF2826 0.86 -1.0 347,659 - GFF2826 0.89 -0.4 347,659 - GFF2826 0.89 +1.1 347,659 - GFF2826 0.89 -0.0 347,659 - GFF2826 0.89 +0.1 347,804 - -0.4 347,885 + GFF2827 0.14 -0.0 348,159 + GFF2827 0.61 -0.3 348,316 + GFF2827 0.88 +0.1 348,388 + +0.3 348,389 - +0.1 348,464 - -0.3 348,466 - -0.2 348,466 - +0.8 348,466 - +0.0 348,467 + +0.6 348,467 + +0.8 348,468 - +0.1 348,468 - -0.2 348,468 - -0.5 348,472 - +0.1 348,521 - +1.4 348,586 - +0.2 348,601 - +0.2 348,602 + +0.5 348,603 - +1.2 348,641 + +1.1 348,641 + +0.2 348,645 - +0.2 348,671 + +0.1 348,672 - +0.0 348,725 + +0.6 348,760 + +0.1 348,796 - +0.2 348,846 - GFF2828 0.10 -0.9 348,891 - GFF2828 0.14 -0.1 349,062 + GFF2828 0.27 +0.4 349,062 + GFF2828 0.27 +0.0 349,063 - GFF2828 0.27 -1.6 349,074 + GFF2828 0.28 +0.2 349,077 + GFF2828 0.28 +0.2 349,147 + GFF2828 0.33 +0.4 349,247 + GFF2828 0.41 +0.9 349,248 - GFF2828 0.41 -0.8 349,383 - GFF2828 0.52 +0.4
Or see this region's nucleotide sequence