Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2642 and GFF2643 are separated by 58 nucleotides GFF2643 and GFF2644 are separated by 213 nucleotides GFF2644 and GFF2645 are separated by 49 nucleotides GFF2645 and GFF2646 overlap by 8 nucleotides GFF2646 and GFF2647 are separated by 18 nucleotides GFF2647 and GFF2648 are separated by 51 nucleotides
GFF2642 - Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-), at 167,743 to 171,267
GFF2642
GFF2643 - FIG01048335: hypothetical protein, at 171,326 to 171,535
GFF2643
GFF2644 - Universal stress protein F, at 171,749 to 172,183
GFF2644
GFF2645 - Ethidium bromide-methyl viologen resistance protein EmrE, at 172,233 to 172,571
GFF2645
GFF2646 - FIG01046477: hypothetical protein, at 172,564 to 172,716
GFF2646
GFF2647 - Integrase, at 172,735 to 172,875
GFF2647
GFF2648 - tRNA(Cytosine32)-2-thiocytidine synthetase, at 172,927 to 173,862
GFF2648
Position (kb) 171
172
173 Strain fitness (log2 ratio) -2
-1
0
1 at 170.836 kb on + strand, within GFF2642 at 170.836 kb on + strand, within GFF2642 at 170.836 kb on + strand, within GFF2642 at 170.837 kb on - strand, within GFF2642 at 170.848 kb on + strand, within GFF2642 at 170.849 kb on - strand, within GFF2642 at 170.944 kb on + strand at 170.944 kb on + strand at 170.946 kb on + strand at 170.946 kb on + strand at 171.032 kb on - strand at 171.402 kb on - strand, within GFF2643 at 171.569 kb on - strand at 171.594 kb on + strand at 171.598 kb on + strand at 171.616 kb on + strand at 171.616 kb on + strand at 171.619 kb on + strand at 171.684 kb on - strand at 171.908 kb on + strand, within GFF2644 at 172.108 kb on + strand, within GFF2644 at 172.112 kb on - strand, within GFF2644 at 172.116 kb on - strand, within GFF2644 at 172.116 kb on - strand, within GFF2644 at 172.182 kb on - strand at 172.267 kb on - strand, within GFF2645 at 172.345 kb on - strand, within GFF2645 at 172.355 kb on + strand, within GFF2645 at 172.425 kb on - strand, within GFF2645 at 172.425 kb on - strand, within GFF2645 at 172.425 kb on - strand, within GFF2645 at 172.425 kb on - strand, within GFF2645 at 172.457 kb on + strand, within GFF2645 at 172.542 kb on - strand at 172.565 kb on + strand at 172.571 kb on + strand at 172.571 kb on + strand at 172.615 kb on - strand, within GFF2646 at 172.619 kb on - strand, within GFF2646 at 172.659 kb on + strand, within GFF2646 at 172.702 kb on + strand at 172.716 kb on + strand at 172.717 kb on - strand at 172.717 kb on - strand at 172.717 kb on - strand at 173.079 kb on + strand, within GFF2648 at 173.080 kb on - strand, within GFF2648 at 173.080 kb on - strand, within GFF2648 at 173.080 kb on - strand, within GFF2648 at 173.083 kb on + strand, within GFF2648 at 173.084 kb on - strand, within GFF2648 at 173.085 kb on + strand, within GFF2648
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 170,836 + GFF2642 0.88 +0.1 170,836 + GFF2642 0.88 -1.3 170,836 + GFF2642 0.88 +0.6 170,837 - GFF2642 0.88 +0.1 170,848 + GFF2642 0.88 +0.2 170,849 - GFF2642 0.88 +0.2 170,944 + -0.1 170,944 + -1.7 170,946 + -0.3 170,946 + +0.0 171,032 - +0.5 171,402 - GFF2643 0.36 -0.1 171,569 - +0.1 171,594 + -0.4 171,598 + +0.7 171,616 + +0.2 171,616 + -0.3 171,619 + -2.6 171,684 - -0.0 171,908 + GFF2644 0.37 -0.6 172,108 + GFF2644 0.83 -1.1 172,112 - GFF2644 0.83 -0.2 172,116 - GFF2644 0.84 -0.0 172,116 - GFF2644 0.84 -0.1 172,182 - -1.1 172,267 - GFF2645 0.10 +0.3 172,345 - GFF2645 0.33 -0.0 172,355 + GFF2645 0.36 -1.2 172,425 - GFF2645 0.57 +0.2 172,425 - GFF2645 0.57 -0.1 172,425 - GFF2645 0.57 +0.4 172,425 - GFF2645 0.57 -0.2 172,457 + GFF2645 0.66 +0.2 172,542 - +0.3 172,565 + +0.5 172,571 + +0.2 172,571 + +0.6 172,615 - GFF2646 0.33 +0.0 172,619 - GFF2646 0.36 +1.6 172,659 + GFF2646 0.62 -0.0 172,702 + +0.2 172,716 + +0.3 172,717 - +1.4 172,717 - +0.1 172,717 - +0.3 173,079 + GFF2648 0.16 -1.5 173,080 - GFF2648 0.16 -1.4 173,080 - GFF2648 0.16 +0.4 173,080 - GFF2648 0.16 +0.2 173,083 + GFF2648 0.17 +0.4 173,084 - GFF2648 0.17 -0.2 173,085 + GFF2648 0.17 +0.3
Or see this region's nucleotide sequence