Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2573

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
93,032	+				+0.3
93,153	-				+0.7
93,242	+		GFF2572	0.20	-0.7
93,242	+		GFF2572	0.20	-1.9
93,248	-		GFF2572	0.21	+0.8
93,263	+		GFF2572	0.22	-0.0
93,305	-		GFF2572	0.27	+0.7
93,320	+		GFF2572	0.29	+0.7
93,404	-		GFF2572	0.38	-0.4
93,450	-		GFF2572	0.43	+0.4
93,450	-		GFF2572	0.43	+0.3
94,123	-		GFF2573	0.15	+1.0
94,693	-		GFF2573	0.83	+0.4
94,979	+				-0.6
95,126	+				+0.3
95,138	+				-0.1
95,213	+		GFF2574	0.14	+0.1
95,214	-		GFF2574	0.15	-0.4
95,262	-		GFF2574	0.22	+1.5
95,310	-		GFF2574	0.30	+0.6
95,391	+		GFF2574	0.42	-0.2
95,392	-		GFF2574	0.43	-0.5
95,459	-		GFF2574	0.53	-0.0
95,488	+		GFF2574	0.58	+0.7
95,488	+		GFF2574	0.58	+0.1
95,494	-		GFF2574	0.59	-0.0
95,585	+		GFF2574	0.73	+0.1
95,597	-		GFF2574	0.75	+0.8
95,678	+		GFF2574	0.88	-0.7
95,745	+				-1.0
95,746	-				+0.1
95,746	-				+0.2
95,746	-				+0.1
95,746	-				+0.1
95,754	+				-0.0
95,787	+				-0.4
95,787	+				-1.8
95,787	+				+0.1
95,787	+				+1.0
95,787	+				-1.0
95,788	-				+0.7
95,789	+				-0.1
95,790	-				-0.1
95,790	-				+1.0