Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF257

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
31,646	+		GFF256	0.30	+0.3
31,646	+		GFF256	0.30	-0.4
31,666	-		GFF256	0.32	+0.3
31,741	-		GFF256	0.38	+0.1
31,744	-		GFF256	0.38	-1.6
31,744	-		GFF256	0.38	-0.1
31,824	+		GFF256	0.44	+0.1
31,845	-		GFF256	0.46	+1.2
31,864	-		GFF256	0.47	+0.0
31,875	-		GFF256	0.48	-0.1
31,878	+		GFF256	0.48	-0.1
32,002	+		GFF256	0.58	+0.3
32,003	-		GFF256	0.58	+0.2
32,064	-		GFF256	0.63	+0.0
32,186	+		GFF256	0.72	+0.1
32,190	+		GFF256	0.72	-0.7
32,191	-		GFF256	0.72	+0.1
32,273	+		GFF256	0.79	+0.5
32,274	-		GFF256	0.79	+0.1
32,334	+		GFF256	0.83	-0.2
32,338	+		GFF256	0.84	+0.1
32,354	-		GFF256	0.85	+0.1
32,356	-		GFF256	0.85	-1.2
32,383	+		GFF256	0.87	-2.0
32,384	-		GFF256	0.87	-0.2
32,384	-		GFF256	0.87	+1.9
32,385	+		GFF256	0.87	-0.6
32,385	+		GFF256	0.87	+2.0
32,385	+		GFF256	0.87	+0.6
32,386	-		GFF256	0.88	+0.1
32,386	-		GFF256	0.88	-0.4
32,386	-		GFF256	0.88	+0.5
32,487	+				+0.1
32,538	+				+0.6
32,539	-				+0.1
32,545	+				-0.0
32,549	+				-0.2
32,549	+				-1.6
32,615	-				+0.6
32,615	-				+0.1
32,726	-		GFF257	0.13	-1.2
32,749	-		GFF257	0.16	-0.6
32,951	+		GFF257	0.43	+1.0
32,951	+		GFF257	0.43	-0.3
32,952	-		GFF257	0.43	+0.4
32,973	+		GFF257	0.46	-0.0
32,974	-		GFF257	0.46	-0.8
32,974	-		GFF257	0.46	-0.6
32,984	-		GFF257	0.47	+0.0
32,984	-		GFF257	0.47	-0.6
33,095	+		GFF257	0.62	+0.2
33,128	+		GFF257	0.66	-0.3
33,129	-		GFF257	0.66	+0.4
33,130	+		GFF257	0.67	-0.3
33,316	+				-0.1
33,443	-				+0.0
33,475	+				+0.2
33,479	+				+0.0
33,479	+				-0.2
33,481	+				-0.3
33,608	+				-0.4
33,647	-				-0.0
33,695	+				+0.3
33,696	-				-0.9
33,696	-				-0.2
33,697	+				+0.7
33,895	+		GFF258	0.26	-0.0
33,958	+		GFF258	0.34	-0.0
33,958	+		GFF258	0.34	+0.2
33,958	+		GFF258	0.34	+0.2
33,959	-		GFF258	0.34	-0.4
34,211	+		GFF258	0.67	+0.7
34,247	-		GFF258	0.72	-0.1
34,247	-		GFF258	0.72	+0.4
34,298	-		GFF258	0.79	-0.3