Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2559

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
74,398	-				+0.2
74,445	+				+0.4
74,658	-		GFF2558	0.22	+0.2
74,658	-		GFF2558	0.22	+0.3
74,658	-		GFF2558	0.22	+0.4
74,661	+		GFF2558	0.23	-1.2
74,662	-		GFF2558	0.23	+1.1
74,662	-		GFF2558	0.23	-0.2
74,662	-		GFF2558	0.23	-0.3
74,718	+		GFF2558	0.31	+0.1
74,719	-		GFF2558	0.32	+0.1
74,808	+		GFF2558	0.45	+0.3
74,809	-		GFF2558	0.45	-0.4
74,844	-		GFF2558	0.51	-0.0
74,844	-		GFF2558	0.51	+0.3
74,865	+		GFF2558	0.54	+0.3
74,866	-		GFF2558	0.54	+0.3
74,885	-		GFF2558	0.57	-0.8
75,050	-		GFF2558	0.82	-0.1
75,220	-				+0.5
75,220	-				+0.8
75,369	+		GFF2559	0.24	-0.3
75,409	+		GFF2559	0.28	-0.1
75,745	+		GFF2559	0.66	+0.4
75,745	+		GFF2559	0.66	-1.5
75,746	-		GFF2559	0.66	-0.5
75,850	-		GFF2559	0.78	+0.0
75,883	+		GFF2559	0.82	-0.5
75,969	+				-0.2
76,045	+				-0.1
76,046	-				-0.4
76,297	+				+0.4
76,298	-				-0.6
76,298	-				+1.7
76,314	-				+0.4
76,377	-		GFF2560	0.10	-0.8
76,377	-		GFF2560	0.10	+0.4
76,381	-		GFF2560	0.11	-1.0
76,400	+		GFF2560	0.11	+0.5
76,424	-		GFF2560	0.12	+0.4
76,424	-		GFF2560	0.12	-0.1
76,483	+		GFF2560	0.14	-0.9
76,589	+		GFF2560	0.17	-0.3
76,596	-		GFF2560	0.18	-0.3
76,667	+		GFF2560	0.20	-0.0
76,771	+		GFF2560	0.23	+0.1
76,977	-		GFF2560	0.30	-0.2
77,009	-		GFF2560	0.31	-0.5