Experiment: Acanthamoeba sp., muxed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2545 and GFF2546 are separated by 143 nucleotides GFF2546 and GFF2547 are separated by 12 nucleotides
GFF2545 - Putative transcriptional regulator, at 57,774 to 58,754
GFF2545
GFF2546 - FIG01045761: hypothetical protein, at 58,898 to 60,349
GFF2546
GFF2547 - Aspartate aminotransferase (EC 2.6.1.1), at 60,362 to 61,564
GFF2547
Position (kb) 58
59
60
61 Strain fitness (log2 ratio) -2
-1
0
1
2 at 58.027 kb on + strand, within GFF2545 at 58.186 kb on - strand, within GFF2545 at 58.311 kb on - strand, within GFF2545 at 58.365 kb on - strand, within GFF2545 at 58.439 kb on + strand, within GFF2545 at 58.440 kb on - strand, within GFF2545 at 58.503 kb on - strand, within GFF2545 at 58.663 kb on + strand at 58.664 kb on - strand at 58.665 kb on + strand at 58.794 kb on + strand at 58.794 kb on + strand at 58.843 kb on + strand at 58.874 kb on + strand at 58.898 kb on - strand at 58.996 kb on + strand at 59.455 kb on + strand, within GFF2546 at 59.471 kb on - strand, within GFF2546 at 59.471 kb on - strand, within GFF2546 at 59.471 kb on - strand, within GFF2546 at 59.545 kb on + strand, within GFF2546 at 59.546 kb on - strand, within GFF2546 at 59.548 kb on + strand, within GFF2546 at 59.549 kb on - strand, within GFF2546 at 59.549 kb on - strand, within GFF2546 at 59.613 kb on - strand, within GFF2546 at 59.624 kb on - strand, within GFF2546 at 59.880 kb on + strand, within GFF2546 at 60.058 kb on - strand, within GFF2546 at 60.129 kb on + strand, within GFF2546 at 60.246 kb on - strand at 60.292 kb on + strand at 60.292 kb on + strand at 60.351 kb on - strand at 60.351 kb on - strand at 60.546 kb on - strand, within GFF2547 at 60.709 kb on - strand, within GFF2547 at 60.719 kb on + strand, within GFF2547 at 60.719 kb on + strand, within GFF2547 at 60.880 kb on + strand, within GFF2547 at 60.881 kb on - strand, within GFF2547 at 60.945 kb on - strand, within GFF2547 at 61.250 kb on + strand, within GFF2547 at 61.335 kb on - strand, within GFF2547
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2 remove 58,027 + GFF2545 0.26 -0.2 58,186 - GFF2545 0.42 +0.5 58,311 - GFF2545 0.55 +0.5 58,365 - GFF2545 0.60 +0.9 58,439 + GFF2545 0.68 -0.4 58,440 - GFF2545 0.68 +0.3 58,503 - GFF2545 0.74 +1.8 58,663 + +0.3 58,664 - -0.3 58,665 + +0.1 58,794 + -0.2 58,794 + -0.5 58,843 + +1.1 58,874 + -0.4 58,898 - -0.6 58,996 + -0.4 59,455 + GFF2546 0.38 +0.3 59,471 - GFF2546 0.39 -0.4 59,471 - GFF2546 0.39 +0.0 59,471 - GFF2546 0.39 -0.4 59,545 + GFF2546 0.45 -0.0 59,546 - GFF2546 0.45 +0.0 59,548 + GFF2546 0.45 -0.1 59,549 - GFF2546 0.45 +0.8 59,549 - GFF2546 0.45 -0.3 59,613 - GFF2546 0.49 -1.1 59,624 - GFF2546 0.50 -0.6 59,880 + GFF2546 0.68 -0.4 60,058 - GFF2546 0.80 -0.4 60,129 + GFF2546 0.85 -0.6 60,246 - -0.1 60,292 + +0.1 60,292 + +0.0 60,351 - +0.1 60,351 - +0.5 60,546 - GFF2547 0.15 +0.6 60,709 - GFF2547 0.29 -0.3 60,719 + GFF2547 0.30 +0.5 60,719 + GFF2547 0.30 +0.5 60,880 + GFF2547 0.43 +0.4 60,881 - GFF2547 0.43 -0.0 60,945 - GFF2547 0.48 -0.4 61,250 + GFF2547 0.74 -2.7 61,335 - GFF2547 0.81 +0.0
Or see this region's nucleotide sequence