Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2545

Experiment: Acanthamoeba sp., muxed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-2
57,545	-				+0.7
57,735	+				+0.3
57,799	+				+0.2
58,027	+		GFF2545	0.26	-0.2
58,186	-		GFF2545	0.42	+0.5
58,311	-		GFF2545	0.55	+0.5
58,365	-		GFF2545	0.60	+0.9
58,439	+		GFF2545	0.68	-0.4
58,440	-		GFF2545	0.68	+0.3
58,503	-		GFF2545	0.74	+1.8
58,663	+				+0.3
58,664	-				-0.3
58,665	+				+0.1
58,794	+				-0.2
58,794	+				-0.5
58,843	+				+1.1
58,874	+				-0.4
58,898	-				-0.6
58,996	+				-0.4
59,455	+		GFF2546	0.38	+0.3
59,471	-		GFF2546	0.39	-0.4
59,471	-		GFF2546	0.39	+0.0
59,471	-		GFF2546	0.39	-0.4
59,545	+		GFF2546	0.45	-0.0
59,546	-		GFF2546	0.45	+0.0
59,548	+		GFF2546	0.45	-0.1
59,549	-		GFF2546	0.45	+0.8
59,549	-		GFF2546	0.45	-0.3
59,613	-		GFF2546	0.49	-1.1
59,624	-		GFF2546	0.50	-0.6