Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2528

Experiment: Acanthamoeba sp., muxed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2527 and GFF2528 are separated by 45 nucleotidesGFF2528 and GFF2529 are separated by 58 nucleotides GFF2527 - Choloylglycine hydrolase (EC 3.5.1.24), at 40,950 to 42,041 GFF2527 GFF2528 - Hexuronate utilization operon transcriptional repressor ExuR, at 42,087 to 42,878 GFF2528 GFF2529 - L-galactonate dehydrogenase (EC 1.1.1.-), at 42,937 to 43,962 GFF2529 Position (kb) 42 43Strain fitness (log2 ratio) -1 0 1at 41.322 kb on + strand, within GFF2527at 41.740 kb on - strand, within GFF2527at 41.969 kb on + strandat 42.215 kb on - strand, within GFF2528at 42.282 kb on - strand, within GFF2528at 42.686 kb on + strand, within GFF2528at 42.707 kb on + strand, within GFF2528at 42.717 kb on + strand, within GFF2528at 42.762 kb on - strand, within GFF2528at 42.954 kb on + strandat 43.071 kb on + strand, within GFF2529at 43.133 kb on + strand, within GFF2529at 43.134 kb on - strand, within GFF2529at 43.255 kb on + strand, within GFF2529at 43.334 kb on + strand, within GFF2529at 43.334 kb on + strand, within GFF2529at 43.358 kb on + strand, within GFF2529at 43.467 kb on - strand, within GFF2529at 43.467 kb on - strand, within GFF2529

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-2
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41,322 + GFF2527 0.34 +0.1
41,740 - GFF2527 0.72 +0.2
41,969 + +1.4
42,215 - GFF2528 0.16 -0.0
42,282 - GFF2528 0.25 -0.8
42,686 + GFF2528 0.76 -0.6
42,707 + GFF2528 0.78 +0.1
42,717 + GFF2528 0.80 -0.5
42,762 - GFF2528 0.85 +0.2
42,954 + -0.8
43,071 + GFF2529 0.13 +0.2
43,133 + GFF2529 0.19 +0.7
43,134 - GFF2529 0.19 +0.4
43,255 + GFF2529 0.31 +0.4
43,334 + GFF2529 0.39 +1.2
43,334 + GFF2529 0.39 +1.0
43,358 + GFF2529 0.41 +0.2
43,467 - GFF2529 0.52 +0.3
43,467 - GFF2529 0.52 -0.3

Or see this region's nucleotide sequence